| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,184,678 – 6,184,785 |
| Length | 107 |
| Max. P | 0.837867 |
| Location | 6,184,678 – 6,184,785 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.46 |
| Mean single sequence MFE | -24.89 |
| Consensus MFE | -15.54 |
| Energy contribution | -15.10 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6184678 107 + 22224390 AU-AAGCCGCUGAAUGGGAUCCUCUAUAAAAAGUAGAGAUGCCUAAGCAUACGCUCACUCACUGUGCUAUUUAAAGGCAGAC----GAGCACGUCUUUAAAA-A------CG-UCUUUUU ..-..((((((....((.(((.(((((.....)))))))).))..)))....((.((.....)).))........)))((((----(....)))))......-.------..-....... ( -26.10) >DroSec_CAF1 10952 114 + 1 AU-AAGCCGCUGAACGAGAUCCUCUAUAAAAAGUAGAGAUGCUUAAGCAUACUC----UCACUGUGCUAUUUAAAGGCAGACAGACGGGCACAUCUCUAAAA-AAUAAGGCGUUCUGCUU ..-.....((.((((((((..((((((.....))))))((((....))))..))----))..((((((.......(.....).....)))))).........-........)))).)).. ( -26.40) >DroSim_CAF1 12044 93 + 1 AU-AAGCCACUGAACGAGAUCCUCUAUAAAAAGUAGAGAUGCUUAAGUACACUC----UCACUGUGCUAUUUAAAGGCAGACAGACG----------------------GCGUUCUUCUU ..-..(((.(((.........((((((.....)))))).(((((((((((((..----.....))).))))))..))))..)))..)----------------------))......... ( -21.90) >DroEre_CAF1 11155 112 + 1 AUUAAGCCACUGAAUGAGAUCCCCUAUAAAAUGUAGAGAUGCCUAGGCAUAUAU----UUAUUAUGCCAAUUAAAAGCAGACGG----GUAUGUCUUUAAGAAAAUAAGGUGGAUUAUUC ...........((((..((((((((.........(((.((((((.((((((...----....))))))........(....)))----)))).)))...........))).))))))))) ( -25.15) >consensus AU_AAGCCACUGAACGAGAUCCUCUAUAAAAAGUAGAGAUGCCUAAGCAUACUC____UCACUGUGCUAUUUAAAGGCAGACAG__G_GCACGUCUUUAAAA_A_____GCGUUCUUCUU .....(((.......(((...((((((.....))))))...))).((((((...........)))))).......))).......................................... (-15.54 = -15.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:39 2006