| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,184,128 – 6,184,264 |
| Length | 136 |
| Max. P | 0.921868 |
| Location | 6,184,128 – 6,184,227 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 91.09 |
| Mean single sequence MFE | -35.90 |
| Consensus MFE | -26.58 |
| Energy contribution | -27.26 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6184128 99 + 22224390 GUUGCAGGGGGUGUGGCCGGUGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGG .((((...((.((((.((.........)).)))).))((((((((((((((((...........)).)))))))))))))).........))))..... ( -38.60) >DroSec_CAF1 10408 99 + 1 GUUGCAGGGGGUGUGGCCGGAGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAAAAGGACGCGAAAAGG .((((...((.((((.((.........)).)))).))((((((((((((((((...........)).)))))))))))))).........))))..... ( -38.60) >DroSim_CAF1 11500 99 + 1 GUUGCAGGGGGUGUGGCCGGAGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGG .((((...((.((((.((.........)).)))).))((((((((((((((((...........)).)))))))))))))).........))))..... ( -38.60) >DroEre_CAF1 10602 97 + 1 GCUUCAGGGGGCGUGGCCGGUGGCAAAGGGCGCAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGACGAGGAGAAGGACGCAAAUAGG (((((.(..((((((.((.........)).))).)))..)..(((.(((.(((......)..(((.....)--)))).))).))).))).))....... ( -28.20) >DroYak_CAF1 12226 97 + 1 GCUUCGGGGGGCGUGGCCGGUGGCAAAGGGCACAUCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGGUGAGCAGAAGGACGCAAAUAGG ((((((..((..(((.((.........)).)))..))..)..(((((((((((......)..(((.....)--)))))))))))).))).))....... ( -35.50) >consensus GUUGCAGGGGGUGUGGCCGGUGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGG ((....(..((((((.((.........)).))).)))..)(((((((((((((...........)).)))))))))))............))....... (-26.58 = -27.26 + 0.68)
| Location | 6,184,154 – 6,184,264 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 93.44 |
| Mean single sequence MFE | -36.07 |
| Consensus MFE | -30.66 |
| Energy contribution | -31.46 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6184154 110 + 22224390 AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... ( -38.90) >DroSec_CAF1 10434 110 + 1 AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAAAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... ( -39.20) >DroSim_CAF1 11526 110 + 1 AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... ( -38.90) >DroEre_CAF1 10628 108 + 1 AGGGCGCAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGACGAGGAGAAGGACGCAAAUAGGGCCCAUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .(((((.(((....))).)))))................((..((--(((((.((((...((.(.(.....).).))....))))(((...)))...)))))))..)).. ( -31.40) >DroYak_CAF1 12252 108 + 1 AGGGCACAUCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGGUGAGCAGAAGGACGCAAAUAGGGCCCAUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((...........(((((((((((......)..(((.....)--)))))))))))).((((.....((((..............))))......))))))))..... ( -31.94) >consensus AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... (-30.66 = -31.46 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:38 2006