| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,179,253 – 6,179,345 |
| Length | 92 |
| Max. P | 0.514095 |
| Location | 6,179,253 – 6,179,345 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 81.52 |
| Mean single sequence MFE | -18.31 |
| Consensus MFE | -11.77 |
| Energy contribution | -13.65 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6179253 92 - 22224390 UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGUCAUUGAUAUUAGGUUUAUGUACACUUAUGUACAUUCAAUUAAGUUGCGAUUG ....(((((.(((((((.(((....)))))))))).............((((....(((((((....)))))))....)))).....))))) ( -19.80) >DroSec_CAF1 7887 78 - 1 UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGCCAUUGAUAUUGGGUUUAUGUACACUUAUGUGCAUUCAA-------------- ......(((((..((((..((((.......))))..))))..))))).........(((((((....)))))))....-------------- ( -17.70) >DroSim_CAF1 8784 92 - 1 UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGCCAUUGAUAUUAGGCUUAUGUACACUUAUGUGCAUUCAACUAAGUUGCGAUUG ....(((((.(((((((.(((....)))))))))).............((((....(((((((....)))))))....)))).....))))) ( -22.00) >DroEre_CAF1 8106 88 - 1 UAUGUAAUCAAGUGCAACUGUAUUUGCACUAAACUUUUGCCGUUGUUAUUAGUUUUAUUUAUACUUA----CAUUCAAUUAAGUUGGGAUUG ....(((((.(((((((......))))))).(((((.......(((....(((.........))).)----)).......)))))..))))) ( -13.74) >consensus UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGCCAUUGAUAUUAGGUUUAUGUACACUUAUGUGCAUUCAAUUAAGUUGCGAUUG ......(((((..((((..((((.......))))..))))..))))).((((....((((((......))))))....)))).......... (-11.77 = -13.65 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:36 2006