| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,177,406 – 6,177,510 |
| Length | 104 |
| Max. P | 0.669946 |
| Location | 6,177,406 – 6,177,510 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 84.30 |
| Mean single sequence MFE | -21.29 |
| Consensus MFE | -16.07 |
| Energy contribution | -16.57 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6177406 104 - 22224390 CCUUUUUCCCGGGGGGCAAAUAAUAACUAGGUUAAGUGACUCUUUGU-UGUGACCCGACCCCCUUUCCCUUUUGGCUACGCCACUGCACU-CUCUUUCUCUUCUUC ..........(((((.......(((((.(((((....))).))..))-))).......))))).........((((...)))).......-............... ( -20.14) >DroSec_CAF1 6015 104 - 1 CCUUUCUC-CGGGGGUCAAAUAAUAACUAGGUUAAGUGACUCUUUGU-UGUGACCCGACCCCCUUUCCCUCUUGGCUACGCCACUGCACUUCUCUUUCUCUUCCUC ........-.(((((((.....(((((.(((((....))).))..))-))).....))))))).........((((...))))....................... ( -24.00) >DroEre_CAF1 6156 91 - 1 UCUUUUUCACGGGGGGA-AAUAAUAACUAGGUUAAGUGACUUUUUGU-UGUGACCCGACCCCCUU------UUGGCUACGCCAAUGCACU-CUCUUUC------UC ..........(((((..-....(((((.(((((....)))))...))-))).......)))))..------(((((...)))))......-.......------.. ( -21.82) >DroYak_CAF1 6182 93 - 1 UUUUUUUCACGGGGGGAAAACAAUAACUAGGUUAAGUGACUUUUUGUUUGUUACCCGACCCCCUU------UUGGCUACGCCACUGCACU-CUUUUUC------UC ..........(((((...(((((.....(((((....))))).....)))))......)))))..------.((((...)))).......-.......------.. ( -19.20) >consensus CCUUUUUCACGGGGGGAAAAUAAUAACUAGGUUAAGUGACUCUUUGU_UGUGACCCGACCCCCUU______UUGGCUACGCCACUGCACU_CUCUUUC______UC ..........(((((.......(((((.(((((....)))))...)).))).......))))).........((((...))))....................... (-16.07 = -16.57 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:35 2006