| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,164,911 – 6,165,001 |
| Length | 90 |
| Max. P | 0.642845 |
| Location | 6,164,911 – 6,165,001 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 97.03 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -23.53 |
| Energy contribution | -23.87 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6164911 90 + 22224390 AAUUCACAUGUGACAAUGUGCGAGCCAGAAUGAAAAGCCAAAAUGAAUGGUUGGAAAAUCCGCAGAGGAAACGCCGCGGGCCAGCUCCUC ....(((((......))))).((((..........(((((.......)))))((....(((((.(.(....).).))))))).))))... ( -23.80) >DroSec_CAF1 3505 89 + 1 AAUUCACAUGUGACAAUGUGCGAGCCAGAAUGAAAAGCCAGAAUGAAUGGUAGGAAAAUCCGCAGAGGAAACGCCGCGGGCCAGCUCCA- ....(((((......))))).((((...........((((.......)))).((....(((((.(.(....).).))))))).))))..- ( -24.20) >DroSim_CAF1 5852 89 + 1 AAUUCACAUGUGACAAUGUGCGAGCCAGAAUGAAAAGCCAGAAUGAAUGGUUGGAAAAUCCGCAGAGGAAACGCCGCGGGCCAGCUCCA- ....(((((......))))).((((..........(((((.......)))))((....(((((.(.(....).).))))))).))))..- ( -24.60) >consensus AAUUCACAUGUGACAAUGUGCGAGCCAGAAUGAAAAGCCAGAAUGAAUGGUUGGAAAAUCCGCAGAGGAAACGCCGCGGGCCAGCUCCA_ ....(((((......))))).((((..........(((((.......)))))((....(((((.(.(....).).))))))).))))... (-23.53 = -23.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:30 2006