Locus 228

Sequence ID X_DroMel_CAF1
Location 791,236 – 791,344
Length 108
Max. P 0.551830
window343

overview

Window 3

Location 791,236 – 791,344
Length 108
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 95.76
Mean single sequence MFE -41.87
Consensus MFE -41.50
Energy contribution -41.83
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.99
SVM decision value 0.04
SVM RNA-class probability 0.551830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 791236 108 - 22224390
--GGAGUUAGUGGCGGCCAACAGGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAUGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC
--(((......(((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...))))))))))....)))...... ( -38.30)
>DroSec_CAF1 3415 110 - 1
GCGGAGUUAGAGGCGGCCAAUAGGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAGGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC
(((((..(((((((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...)))))))))))))))))..)).. ( -43.60)
>DroSim_CAF1 6978 110 - 1
GCGGAGUUAGAGGCGGCCAAUGAGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAGGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC
(((((..(((((((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...)))))))))))))))))..)).. ( -43.70)
>consensus
GCGGAGUUAGAGGCGGCCAAUAGGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAGGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC
..(((..(((((((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...)))))))))))))))))...... (-41.50 = -41.83 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:26 2006