| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,153,792 – 6,153,904 |
| Length | 112 |
| Max. P | 0.989159 |
| Location | 6,153,792 – 6,153,904 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.32 |
| Mean single sequence MFE | -41.73 |
| Consensus MFE | -27.01 |
| Energy contribution | -27.70 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.989159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6153792 112 + 22224390 AAAGUAAAAACAAGAGGGGGUGGGCGGCCAAUUGAGUGGGCGUGGUGAUGGUGACCCCAUUAACAUGCCCAAGCCGAAGCCCAAGCC-----GAAAAAAGCUUACGCUGCACUCUGU ............((((((..((((((((........((((((((.((((((.....)))))).)))))))).)))...)))))..))-----......(((....)))...)))).. ( -41.30) >DroSec_CAF1 6974 103 + 1 AAAGUAAAA---GGGGGCGGUGGGCGGCGAAUUGAGUGGGCGUGGUGCUGGUGACCCCAUUAACAUGCCCAAGC------CCAAGUC-----CAAAAAAGCUUACGCUGCACUCAGU .((((....---..((((..(((((.((.......))(((((((.((.(((.....))).)).)))))))..))------))).)))-----)......))))..((((....)))) ( -35.60) >DroEre_CAF1 4685 107 + 1 AAAGUACAAGGGG----GCUUGGGUGGCGAAUGCAGUGGGCGUGGUGAUGGUGACCCCAUUAGCAUGCCCAAGC------CCAUGCCCAGGCCAAAAAAGCUUACGCUGCACUCUAU ........(((((----(((((((((((........((((((((.((((((.....)))))).)))))))).))------)...))))))))).....(((....)))...)))).. ( -48.80) >DroYak_CAF1 4308 106 + 1 AAAGUAAAAGGCGGGCGGUGUGGGCGUCGAAUGGAGUGGGCGUGGUGCUGGUGACCCCAUUAAUAUGCCCAAGC------CCAAGCC-----GAAAAAAGCUUACGCUGCACUCUAU .........((.(.(((((((((((......(((..(((((.(((.(((((((....)))))....))))).))------)))..))-----)......))))))))))).).)).. ( -41.20) >consensus AAAGUAAAAGG_GGGGGGGGUGGGCGGCGAAUGGAGUGGGCGUGGUGAUGGUGACCCCAUUAACAUGCCCAAGC______CCAAGCC_____CAAAAAAGCUUACGCUGCACUCUAU .......................((((((.......((((((((.((((((.....)))))).))))))))...........((((.............)))).))))))....... (-27.01 = -27.70 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:19 2006