Locus 2269

Sequence ID X_DroMel_CAF1
Location 6,148,310 – 6,148,411
Length 101
Max. P 0.587606
window3676

overview

Window 6

Location 6,148,310 – 6,148,411
Length 101
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 81.49
Mean single sequence MFE -22.28
Consensus MFE -17.17
Energy contribution -17.83
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.77
SVM decision value 0.11
SVM RNA-class probability 0.587606
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6148310 101 - 22224390
UUCC-A--CGGUUUUUUACACUCGUUUUUUCUUCAGUUUUGCCUUUGUUUUUGUUUGGCUUUUAGCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA
....-(--((((.......)).)))..........((((((((.......(((((((.(.....((......))......).))))))).....)))))))).. ( -21.20)
>DroEre_CAF1 3739 101 - 1
UUUUAACCCGAUCUU---AGCUCGCUGUUUCUGUUGUUAUGCCUUUGUUUUUGUUUGGCUUUUGGCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA
...............---.(((.((((.....((((((.((((..((((.(.((..(((.....)))..)).).))))..))))))))))...))))..))).. ( -26.10)
>DroYak_CAF1 3798 93 - 1
UUGU-ACCCGGUCCC---AGCUCGUUGUUUCUUCGGUUUUGCCUUUGUUUUUGUUUG-------GCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA
....-..((((....---(((.....)))...))))..(((((((.(((.(((((((-------.(..............).))))))).....)))))))))) ( -19.54)
>consensus
UUCU_ACCCGGUCUU___AGCUCGUUGUUUCUUCAGUUUUGCCUUUGUUUUUGUUUGGCUUUU_GCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA
...................................((((((((.......(((((((.(.....((......))......).))))))).....)))))))).. (-17.17 = -17.83 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:14 2006