Locus 2264

Sequence ID X_DroMel_CAF1
Location 6,131,800 – 6,131,915
Length 115
Max. P 0.772470
window3665

overview

Window 5

Location 6,131,800 – 6,131,915
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -25.18
Consensus MFE -18.28
Energy contribution -20.16
Covariance contribution 1.88
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.73
SVM decision value 0.53
SVM RNA-class probability 0.772470
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6131800 115 - 22224390
CCAAAUCUGGUGCCUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCUGUUUGUGUUCAUAACGAAUGCAAACAAACAAAAUGCUGCUGAUCCC
.....(((((((..(((((.....)))))..)))))))...(((....))).(.(((((((..((((.(((((((((((.....)))))))))))....))))..))))))).). ( -30.60)
>DroSec_CAF1 1998 111 - 1
CCAAAUCUGGUGACUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCUUGUUGUGUUCAUAACGAAUGCAAA----CAAAAUGCUGCUGAUCCC
.....(((((((..(((((.....)))))..)))))))...(((....))).(.(((((((..((((....((((((((.....)))))))).----..))))..))))))).). ( -27.00)
>DroSim_CAF1 4098 115 - 1
CCAAAUCUGGUGACUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCUUGUUGUGUUCAUAACGAAUGCAAACAAACAAAAUGCUGCUGAUCCC
.....(((((((..(((((.....)))))..)))))))...(((....))).(.(((((((..((((.(((((((((((.....)))))).)))))...))))..))))))).). ( -27.30)
>DroEre_CAF1 2017 108 - 1
CCAA-GCUGGUGACUACAUCAUCA----AUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCU--UUGUGUUCGUAAUGAAUGCAAACAAACAAUAUUCUGCUGAUCCA
...(-((((((((.....))))))----.............(((.((((..(((....((((((.....--)))))))))..)))).)))................)))...... ( -21.00)
>DroYak_CAF1 1983 109 - 1
CCAAAUCUGGUGACUACAUCAUCU----AUCUGCCAGAGAAGCAAUCAUACCGAAUUAGCAUAAUUUCU--UUGUAUUCACAAUGUAUGCAAACAAACAAAAUGCUGCUGGUCCA
........(((((.....))))).----....(((((...((((.((.....))....(((((......--((((....))))..)))))............)))).)))))... ( -20.00)
>consensus
CCAAAUCUGGUGACUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCU__UUGUGUUCAUAACGAAUGCAAACAAACAAAAUGCUGCUGAUCCC
.....(((((((..(((((.....)))))..)))))))..............(.(((((((..((((....((((((((.....)))))))).......))))..))))))).). (-18.28 = -20.16 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:05 2006