Locus 2260

Sequence ID X_DroMel_CAF1
Location 6,112,885 – 6,112,983
Length 98
Max. P 0.987336
window3656

overview

Window 6

Location 6,112,885 – 6,112,983
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 81.94
Mean single sequence MFE -25.56
Consensus MFE -20.51
Energy contribution -19.31
Covariance contribution -1.20
Combinations/Pair 1.33
Mean z-score -2.54
Structure conservation index 0.80
SVM decision value 2.08
SVM RNA-class probability 0.987336
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6112885 98 - 22224390
CAGUUUUCUACUGUUUACAGUACAGUUUGCUGUUAGCUUACAGCAGUGUUCUCGCUGCCAGCCCUGGUUUGCAUUGCAGAACUACAGUGGAUCCUUCC
......((((((((............(((((((......))))))).(((((.(((((.(((....))).)))..))))))).))))))))....... ( -29.80)
>DroSec_CAF1 9432 89 - 1
CACUCCUUUACUGAUUACAGUUCUCUUGGCUGUUAGCUUACAGCAGU---------GCCAGCCCUGGUUUUCAUUGCAGAACUACAGUGGAUUCUUCC
......(((((((.....((((((...(((.....)))....(((((---------(..(((....)))..)))))))))))).)))))))....... ( -21.10)
>DroSim_CAF1 9035 89 - 1
CACUCUUUUACUGAUUACAGUUCACUUGGCUGUUAGCUUACAGCAGU---------GCCAGCCCUGGUUUUUAUUGCAGAACUACAGUGGAUUCUUCC
......(((((((.....(((((.....(((((......)))))...---------((((....))))..........))))).)))))))....... ( -19.90)
>DroEre_CAF1 10279 98 - 1
CACUCUUCUGCUGUUUACAUUACAGUUUGCUGUUAGCUUGCAGCAGUAUUAUCGCUGCCAGCCCUGGCUUAAAUUGCAACACAACAGUAGAUACUUCC
......(((((((((.......(((((((..(((((((.(((((.........))))).)))..)))).)))))))......)))))))))....... ( -27.62)
>DroYak_CAF1 9559 97 - 1
CACUCUUCUACUGUUUACAUUACAGUUUGCUGUUAGCUUACAGCAGC-UUAUCGGUGCCAGCCCUGGCUUACAUUGCAGCACGACAGUAGAUCCUUCC
......(((((((((............((((((......))))))((-(...(((((..(((....)))..))))).)))..)))))))))....... ( -29.40)
>consensus
CACUCUUCUACUGUUUACAGUACAGUUUGCUGUUAGCUUACAGCAGU_UU_UCG_UGCCAGCCCUGGUUUACAUUGCAGAACUACAGUGGAUCCUUCC
......(((((((...............(((((......))))).((.........((((....)))).......)).......)))))))....... (-20.51 = -19.31 +  -1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:56 2006