Locus 226

Sequence ID X_DroMel_CAF1
Location 786,624 – 786,720
Length 96
Max. P 0.961155
window341

overview

Window 1

Location 786,624 – 786,720
Length 96
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 69.62
Mean single sequence MFE -46.08
Consensus MFE -21.03
Energy contribution -23.87
Covariance contribution 2.84
Combinations/Pair 1.13
Mean z-score -2.10
Structure conservation index 0.46
SVM decision value 1.52
SVM RNA-class probability 0.961155
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 786624 96 + 22224390
UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCGGGAAGGUCCGCCGGACUCAAAGCCGGCUCU---------GUGGACUCC---------------UGGGUAUAUGUGCCCAGGGAGCGCA
.((((((((((..((((((((.((.....)).)))))))).(((((........))))))))---------)))...(((---------------((((((....))))))))).)))). ( -55.40)
>DroPse_CAF1 174270 81 + 1
UGUGCUGCAGGUAGGCCUUCCUGCUUCGCGCUGUCAUGUCCGCCGGACACAGCAUCGAGUCGAAUGA--------AC----------------------AACAUCUGUC---------CA
.(((..(((((........)))))..)))(((((...((((...)))))))))...(.(.((.(((.--------..----------------------..))).)).)---------). ( -23.00)
>DroSec_CAF1 102617 96 + 1
UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCGGGAAGGUCCGCCGGACUCAAAGCCGGCUCU---------GUGGACUCC---------------GGUGCAUAGGUGCCCAGAGAGCGCA
.((((((((((..((((((((.((.....)).)))))))).(((((........))))))))---------)))..(((.---------------((.(((....))))).))).)))). ( -49.90)
>DroEre_CAF1 116037 96 + 1
UGUGCCGCAGGAAGGCCUUCCGGCUGCGGGCAGGAAGGUCCGCCGGACUCAAAGCCGGCUCC---------GUGGACUCC---------------GGAACAUAGGUGCCUAGAGAGCGCA
.(((((((.(((.((((((((.((.....)).)))))))).(((((........))))))))---------)))..(((.---------------.(.((....))..)..))).)))). ( -41.00)
>DroYak_CAF1 102910 105 + 1
UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCAGGAAGGUCCGCCGGACUCAAAGCCGGCUCCACGGACUCUGCGGACUCC---------------GGGGCAUAGGUGUCCAGGGAGCGCA
.((((((((((..((((((((.((.....)).)))))))).(((((........))))).........))))))).((((---------------.(((((....)))))..))))))). ( -52.50)
>DroAna_CAF1 123544 111 + 1
UGUGCCGGAGAAAGGCCUUACGGCAGCGUGCCGGCAAGUCCGCCGGACUCAAGGCGGGCUCU---------AUGGCGUCCAACUGACUGGCGGAUGAUCCUUGGGUGUCCAGGGAUCGCA
..((((((......(((....)))......)))))).(((((((((..(((.(..((((.(.---------...).))))..)))))))))))))(((((((((....)))))))))... ( -54.70)
>consensus
UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCAGGAAGGUCCGCCGGACUCAAAGCCGGCUCU_________GUGGACUCC_______________GGGGCAUAGGUGCCCAGGGAGCGCA
....((((.....((((((((.((.....)).)))))))).(((((........)))))............)))).............................((((.......)))). (-21.03 = -23.87 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:24 2006