| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,087,089 – 6,087,188 |
| Length | 99 |
| Max. P | 0.625227 |
| Location | 6,087,089 – 6,087,188 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.66 |
| Mean single sequence MFE | -35.55 |
| Consensus MFE | -26.66 |
| Energy contribution | -26.55 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6087089 99 - 22224390 AGGUGCUCAUCUCGUGCGGCAAACGCGGCGAUGUUUGCGUCUUCGAUGUGAGACAACGUACGCUGCGUCAUCGCUAUCAGGUGAGUUGU------UCGGUUAG---------AU .((.((((((((.((((((...(((((((((((((...(((((......)))))))))).))))))))..)))).)).))))))))...------))......---------.. ( -37.10) >DroVir_CAF1 6099 105 - 1 AGGUGCUCAUCUCCUGCGGCAAGCGCGGCGACGUUUGCGUCUUCGAUGUGCGCCAACGCACACUGCGACAUCGCUAUCAGGUGAGUCUUGAUCAAUCGCAUCU---------AU ((((((((((((...((((....(((((.((((....)))).....((((((....)))))))))))...))))....)))))).....((....))))))))---------.. ( -37.30) >DroGri_CAF1 5857 102 - 1 AGGUGCUCAUCUCGUGCGGCAAGCGCGGCGACGUUUGCGUCUUUGAUGUGCGUCAGCGCACACUGCGGCAUCGCUAUCAGGUGAGUGGUGAU---UUGCAAUU---------AG ..((((......(((((.....)))))(((((((..(((((...)))))))))).))))))..(((((.(((((((((....)).)))))))---)))))...---------.. ( -37.10) >DroEre_CAF1 4258 108 - 1 AGGUGCUCAUCUCGUGCGGCAAACGCGGCGACGUUUGCGUCUUCGAUGUGAGACAACGUACGCUGCGCCAUCGCUAUCAGGUGAGUUCU------UUGCAUAAAUGCGCUUAAA (((.((((((((.((((((....((((((((((((...(((((......)))))))))).)))))))...)))).)).)))))))).))------).(((....)))....... ( -39.40) >DroYak_CAF1 4247 99 - 1 AGGUGCUCAUCUCGUGCGGCAAACGCGGCGACGUUUGCGUCUUCGAUGUGAGACAACGUACGCUGCGCCAUCGCUAUCAGGUGGGUUAU------UGGCAUAC---------AA ....((((((((.((((((....((((((((((((...(((((......)))))))))).)))))))...)))).)).))))))))...------........---------.. ( -35.20) >DroAna_CAF1 5099 98 - 1 AGGUCCUCAUCUCCUGCGGUAAACGCGGCGAUAUAUGUGUCUUUGAUGUGAGGCAACGAACGCUCCGUCAUCGUUAUCAGGUGAGUUUU------U-CCUUAG---------AA (((..(((((((...(((((..(((.((((.......((((((......)))))).....)))).))).)))))....)))))))....------.-)))...---------.. ( -27.20) >consensus AGGUGCUCAUCUCGUGCGGCAAACGCGGCGACGUUUGCGUCUUCGAUGUGAGACAACGUACGCUGCGCCAUCGCUAUCAGGUGAGUUGU______UCGCAUAG_________AA ....((((((((...((((....((((((((((....))))......(((.(....).)))))))))...))))....))))))))............................ (-26.66 = -26.55 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:48 2006