Locus 2252

Sequence ID X_DroMel_CAF1
Location 6,071,297 – 6,071,399
Length 102
Max. P 0.614236
window3645

overview

Window 5

Location 6,071,297 – 6,071,399
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -24.90
Consensus MFE -20.94
Energy contribution -21.34
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.84
SVM decision value 0.16
SVM RNA-class probability 0.614236
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6071297 102 + 22224390
AGAGAACAGUGAAAAUAACGAAAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC
...(..(((((......((....)).....))).(((((((....))))))).......))..).(((((.((((((((........)))))))).))))). ( -25.50)
>DroSec_CAF1 2623 102 + 1
AGAGAACAGUGAAAAUAACGAGAGUGCGGGCAGAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGA
.......................((((..((...(((((((....)))))))......))..))))......((((((.(((((......))))).)))))) ( -23.50)
>DroSim_CAF1 4592 102 + 1
AGAGAACAGUGAAAAUAACGAGAGUGCGGGCAGAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGA
.......................((((..((...(((((((....)))))))......))..))))......((((((.(((((......))))).)))))) ( -23.50)
>DroEre_CAF1 17367 102 + 1
AGUGAACAGUGAAAAUAACGAGAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUCGCCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC
.((((.(((((......((....)).....))).(((((((....)))))))...))..))))..(((((.((((((((........)))))))).))))). ( -26.80)
>DroYak_CAF1 4452 102 + 1
AGAGAACAGUGAAAAUAACGAGAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUGGCCACAGGAUAUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC
........(((......((....)).....))).(((((((....)))))))..((((....)))).......(((((.(((((......))))).))))). ( -25.20)
>consensus
AGAGAACAGUGAAAAUAACGAGAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC
........(((......((....)).....))).(((((((....)))))))..(((......))).......(((((.(((((......))))).))))). (-20.94 = -21.34 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:46 2006