Locus 2251

Sequence ID X_DroMel_CAF1
Location 6,070,780 – 6,070,885
Length 105
Max. P 0.988966
window3644

overview

Window 4

Location 6,070,780 – 6,070,885
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 97.52
Mean single sequence MFE -24.36
Consensus MFE -23.78
Energy contribution -23.58
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 0.98
SVM decision value 2.14
SVM RNA-class probability 0.988966
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6070780 105 + 22224390
AUUACAGCACUUCCAAAUACGGUAGUACCACUAUCUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA
.((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -24.80)
>DroSec_CAF1 2106 105 + 1
AUUACAGCACUUCCAAAUACGGUAGUACCACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA
.((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -24.80)
>DroSim_CAF1 4075 105 + 1
AUUACAGCACUUCCAAAUACGGUAGUACCACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA
.((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -24.80)
>DroEre_CAF1 16844 105 + 1
AUUACAGCAUUUCCAAAUACGGUAGUACAACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGGAUGUUCGAUAUUUGUGUAAAA
.((((((((((.((((((((.(((((....(((...))).(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -23.30)
>DroYak_CAF1 3928 105 + 1
AUUACAACACUUCCAAAUACGGUAGUACCAAUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGGAUGUUCGAUAUUUGUGUAAAA
.((((((((.((((((((((.(((((..(((((((....)))))))..((((........))))...)))))...)))))))))))))..........))))).. ( -24.10)
>consensus
AUUACAGCACUUCCAAAUACGGUAGUACCACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA
.((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. (-23.78 = -23.58 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:45 2006