Locus 2250

Sequence ID X_DroMel_CAF1
Location 6,067,062 – 6,067,182
Length 120
Max. P 0.546896
window3643

overview

Window 3

Location 6,067,062 – 6,067,182
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.61
Mean single sequence MFE -41.72
Consensus MFE -29.37
Energy contribution -29.27
Covariance contribution -0.10
Combinations/Pair 1.30
Mean z-score -1.52
Structure conservation index 0.70
SVM decision value 0.03
SVM RNA-class probability 0.546896
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6067062 120 + 22224390
AUACACAUCACAGCCUCAAGGUGGAUACAUCCUACUCCGAUUUCUUCUGGUGGACGGUGGGUAUUGGCUUGCUGACAAUCGCCCUGCUGGUCACCGCCUACAUGGGCAUCUACCAGGAGG
......(((...(((....)))(((....)))......)))..((((((((((((((..(((....)))..)))......((((((..(((....)))..)).)))).))))))))))). ( -43.00)
>DroGri_CAF1 4169 120 + 1
AUACGCAUCACUCACUGAAAGUGGACACCACCUACUCGGACUUCUUCUGGUGGAGCGUCGGCAUCGCUCUGCUCACGAUUGCCCUACUCGUGACCGCUUACAUGGGCAUCUACCAGGAGG
..............((((..((((...))))....))))....(((((((((((.(((.((((......)))).)))..(((((.....((((....))))..)))))))))))))))). ( -38.40)
>DroEre_CAF1 13124 120 + 1
ACACCCAUCACAGCCUCAAGGUGGAUACCUCCUACUCUGAAUUCUUCUGGUGGACGGUGGGCAUUGGUUUGCUGACGAUCGCCCUGCUGGUCACCGCCUACAUGGGCAUCUACCAGGAGG
.............((((..(((((((......................((((..((((((((..(.(((....))).)..)))).))))..))))((((....)))))))))))..)))) ( -44.20)
>DroWil_CAF1 14137 120 + 1
ACACACAUCCCACCCUAAAAGUUGAGACAUCUUUCUCCGACUUCUUCUGGUGGUCGGUGGGCAUUGCCCUGUUAACAAUUGCCCUGCUGGUGACCGCCUAUAUGGGCAUCUAUCAAGAAG
...(((...(((((....(((((((((......))).)))))).....))))).((((((((((((.........))).))))).)))))))...((((....))))............. ( -34.80)
>DroYak_CAF1 455 120 + 1
AUACCCAUCACAGCCUCAAGGUGGAUACCUCCUAUUCCGACUUCUUCUGGUGGUCGGUGGGCAUCGGUUUGCUGACCAUCGCCCUGCUGGUCACCGCGUACAUGGGCAUCUACCAGGAGG
.............((((..(((((((......................(((((((((..(((....)))..)))))))))((((((((((...))).)))...)))))))))))..)))) ( -45.60)
>DroAna_CAF1 4895 120 + 1
ACACCCACCAUUCACUGCGGGUGGAGACCUCAUAUUCGGACUUCUUCUGGUGGUCGGUGGGCAUUGCCCUGUUGACGAUCGCCCUGCUGGUUACCGCCUACAUGGGCAUCUAUCAGGAGG
...((((((.(((((.....)))))((((......(((((.....))))).))))))))))......(((.((((.(((.((((((..(((....)))..)).)))))))..)))).))) ( -44.30)
>consensus
ACACCCAUCACACCCUCAAGGUGGAUACCUCCUACUCCGACUUCUUCUGGUGGACGGUGGGCAUUGCCCUGCUGACGAUCGCCCUGCUGGUCACCGCCUACAUGGGCAUCUACCAGGAGG
.......((((.........))))...................((((((((((.((((((((((((.........)))).)))).))))......((((....))))..)))))))))). (-29.37 = -29.27 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:44 2006