Locus 2248

Sequence ID X_DroMel_CAF1
Location 6,065,496 – 6,065,588
Length 92
Max. P 0.951045
window3641

overview

Window 1

Location 6,065,496 – 6,065,588
Length 92
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.02
Mean single sequence MFE -29.30
Consensus MFE -20.42
Energy contribution -20.30
Covariance contribution -0.13
Combinations/Pair 1.07
Mean z-score -2.39
Structure conservation index 0.70
SVM decision value 1.41
SVM RNA-class probability 0.951045
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6065496 92 - 22224390
UUUAAUGACGGAUCU--------------------CGGAUCUCGAUUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCGAUUAUAUCAGUUGCU--------UGCUGUAUAAAC
..........(((((--------------------.((.(((((((..(((((((.....))))))).))))))).)).)))))..(((((.((((....--------.))))))))).. ( -27.90)
>DroSec_CAF1 76402 92 - 1
UUUAAUGACGGAUCU--------------------CGGAUCUCGAUUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCGAUUAUAUCAGUUGCU--------UGCUGUAUAAAC
..........(((((--------------------.((.(((((((..(((((((.....))))))).))))))).)).)))))..(((((.((((....--------.))))))))).. ( -27.90)
>DroSim_CAF1 72513 92 - 1
UUUAAUGACGGAUCU--------------------CGGAUCUCGACUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCAAUUAUAUCAGUUGCU--------UGCUGUAUAAAC
..........(((((--------------------.((.(((((((..(((((((.....))))))).))))))).)).)))))..(((((.((((....--------.))))))))).. ( -29.40)
>DroYak_CAF1 76875 119 - 1
UUUGAUGACGGAUCUCUCGGAUCUUUCGGAUCUUUCGGAUCUCUAUUGUUUUGUCUCCCUGGCGGGAUGUCGAGAAUCAAGAUUGAUUAUAUCAGUUGCUUGGUGGCUUGCUGUAUAAA-
((((((...((((((...(((((.....)))))...))))))......(((((.(((((....)))).).))))))))))).....(((((.((((.(((....)))..))))))))).- ( -32.00)
>consensus
UUUAAUGACGGAUCU____________________CGGAUCUCGAUUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCGAUUAUAUCAGUUGCU________UGCUGUAUAAAC
..........(((((......................(((((((((..(((((((.....))))))).)))))).))).)))))..(((((.((((.............))))))))).. (-20.42 = -20.30 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:42 2006