Locus 2246

Sequence ID X_DroMel_CAF1
Location 6,064,648 – 6,064,755
Length 107
Max. P 0.798925
window3637

overview

Window 7

Location 6,064,648 – 6,064,755
Length 107
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 89.04
Mean single sequence MFE -21.18
Consensus MFE -16.90
Energy contribution -16.52
Covariance contribution -0.37
Combinations/Pair 1.10
Mean z-score -1.82
Structure conservation index 0.80
SVM decision value 0.61
SVM RNA-class probability 0.798925
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6064648 107 - 22224390
GAAACAGCACAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUCAUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU--GC
......((.((((((((((((..((.....))...)))))))))))).....(((((.........)))))..................))..............--.. ( -20.20)
>DroSec_CAF1 75584 107 - 1
GAAACAGCAGAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCAAAAUGCAUAAUCUAGUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU--AC
((.((((((((((((((((((..((.....))...))))))))))(((......)))...))).))))).)).................................--.. ( -22.20)
>DroSim_CAF1 71685 107 - 1
GAAACAGCAGAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUAGCUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU--AC
((.((((((((((((((((((..((.....))...))))))))))(((......)))...))).))))).)).................................--.. ( -24.60)
>DroYak_CAF1 76052 104 - 1
-----AGCACAGAUAAGAGUUAUACGAAUAAUUGGGGCUCUUAUCUACCCAAAUGCAUAAUCUUUUUGUAUCCACCAUCAUCAUCAGUCGCCCCCAUAAUAAAAUAUGC
-----.(((((((((((((((...(((....))).)))))))))))......(((((.........)))))...............)).))...((((......)))). ( -17.70)
>consensus
GAAACAGCACAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUAGUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU__AC
......((..(((((((((((...(((....))).)))))))))))......(((((.........)))))..................)).................. (-16.90 = -16.52 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:39 2006