| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,055,263 – 6,055,380 |
| Length | 117 |
| Max. P | 0.804485 |
| Location | 6,055,263 – 6,055,380 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.67 |
| Mean single sequence MFE | -31.27 |
| Consensus MFE | -27.76 |
| Energy contribution | -28.89 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6055263 117 + 22224390 --GGGAGCGUGUCGCCAUUUUGGCUCCUGUCGUGUCCUUGCCAUGGCUAAAAUGGAUUUGCAUGUAAAUUUGUUUU-CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC --(((((.((((.(((.....)))....((((............(((.((((..((((((....))))))..))))-.)))........((((.....)))).))))...)))).))))) ( -29.70) >DroSec_CAF1 66626 117 + 1 --GGGAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCCAUGGCUAAAAUGGAUUUGCAUGUAAAUUUGUUUU-CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC --(((((.((((..(((((((((((..(((((......))))).)))))))))))....(((...((((((((...-(........)..))))))))..)))........)))).))))) ( -36.80) >DroYak_CAF1 64594 117 + 1 --CGAAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCCAUGGCUAUAAUGGAUUUGCAUGUAAAUUUGUUUU-CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC --....(((.(((((((((.(((((..(((((......))))).))))).)))))....(((...((((((((...-(........)..))))))))..))).))))..)))........ ( -32.10) >DroAna_CAF1 69830 115 + 1 UGUGAAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCC-----UGAAAUGGAUUUGCAUGUAAAUUUGUUUUGCGCCUUAUAGUCACAAAUUUUUUGCUCGAUUUUGCACAUUCUC (((((.((((...(((.....)))....((((......))))-----.((((..((((((....))))))..)))))))).......))))).......(((........)))....... ( -26.50) >consensus __GGAAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCCAUGGCUAAAAUGGAUUUGCAUGUAAAUUUGUUUU_CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC ......(((.(((((((((((((((..(((((......))))).)))))))))))....(((...((((((((................))))))))..))).))))..)))........ (-27.76 = -28.89 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:33 2006