Locus 2241

Sequence ID X_DroMel_CAF1
Location 6,053,921 – 6,054,025
Length 104
Max. P 0.648295
window3630

overview

Window 0

Location 6,053,921 – 6,054,025
Length 104
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 88.53
Mean single sequence MFE -28.35
Consensus MFE -19.84
Energy contribution -19.52
Covariance contribution -0.31
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.70
SVM decision value 0.24
SVM RNA-class probability 0.648295
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6053921 104 + 22224390
CAAUUUGUGAUAAUUGAAGGCACCA-AAUCGAUUGGACAG--ACAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAACUGUGCCACAAUUUUCCGCAGAUUG-----CAAU
(((((((((..(((((..(((((.(-(((((((((.....--...)))))))))).((.((((....)))).))......))))).)))))...)))))))))-----.... ( -29.20)
>DroSec_CAF1 65284 108 + 1
CAAUUUGUGAUAAUUGAAGGCACCC-AGUCGAUUGGACAG--GCAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAAGUGUGCCGCAAUUU-CCCCAGAUUUGCAAUCAAU
.((((((.(..(((((..(((((((-.(((.....))).)--).......(((((.((......)).)))))........))))).))))).-.).)))))).......... ( -23.20)
>DroSim_CAF1 61044 103 + 1
CAAUUUGUGAUAAUUGAAGGCACCC-AGUCGAUUGGACAG--GCAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAACUGUGCCGCAAUUU-CCCCAGAUUG-----CAAU
(((((((.(..(((((..(((((((-.(((.....))).)--).......(((((.((.((((....)))).)).)))))))))).))))).-.).)))))))-----.... ( -27.50)
>DroYak_CAF1 62951 106 + 1
CGAUUUGUGAUAAUUGAAGGCACCCAAAUCGAUUGGGCUGCUGCCUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAAGUGUGCCACAAUUU-CCUCGAUUUG-----CAAU
(((.(((.(..(((((..(((((.((((((((((((((....))))))))))))).((.((((....)))).))....).))))).))))).-.).))).)))-----.... ( -33.50)
>consensus
CAAUUUGUGAUAAUUGAAGGCACCC_AAUCGAUUGGACAG__GCAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAACUGUGCCACAAUUU_CCCCAGAUUG_____CAAU
(((((((.(..(((((..(((((...(((((((((..........)))))))))..((.((((....)))).))......))))).)))))...).)))))))......... (-19.84 = -19.52 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:32 2006