| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 783,953 – 784,053 |
| Length | 100 |
| Max. P | 0.883886 |
| Location | 783,953 – 784,053 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.27 |
| Mean single sequence MFE | -37.63 |
| Consensus MFE | -24.23 |
| Energy contribution | -25.50 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 783953 100 + 22224390 GGCAGCU-GCCAUACAAGCGGGGCAAUAAAGGAUCCCGGCAGGAGUGCUGCCACCGCUGAUGUUGGCUAAUCCUCU------------GUCCCUGUCGCGAUCCCGCUCAAAU (((((((-........)))((((((....(((((.((((((..((((.......))))..))))))...))))).)------------)))))))))(((....)))...... ( -34.70) >DroVir_CAF1 164877 80 + 1 AGCUGUUUGCUACGCAUGCGGGACAAAACACGGA---GGCUGGUGUGCUACCACCGCUAGUACUCCCACUCCCACU------------GCCACUG------------------ (((.....)))..(((.(.((((........(((---((((((((((....)).))))))).))))...)))).))------------)).....------------------ ( -23.30) >DroSec_CAF1 99541 100 + 1 GGCAGCU-GCCAUACAGGCGGGGCAAUAGAGGAUUCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCU------------GUCCCUGUCGCGAUCCCGCUCAAAU (((....-))).....(((((((..(((((((((((((((((.((((.......)))).)))))))..))))))))------------)))))))))(((....)))...... ( -47.60) >DroSim_CAF1 60809 100 + 1 GGCAGCU-GCCAUACAGGCGGGGCAAUAGAGGAUCCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCU------------GUCCCUGUCGCGAUCCCGCUCAAAU (((....-))).....(((((((..(((((((((.(((((((.((((.......)))).)))))))...)))))))------------)))))))))(((....)))...... ( -46.60) >DroEre_CAF1 112327 100 + 1 GGCAGCU-GCCACACAGGCGGGGCAAUAGAGAAUUUCGGCAGGAGUGCUGGCUCCACUGCUGUUGGCCAGUCCUCU------------GUCCCUGUCGCGAUCCCGUUCAAAU (((....-))).....(((((((..((((((.((((((((((.((((.......)))).)))))))..))).))))------------)))))))))(((....)))...... ( -36.40) >DroYak_CAF1 100179 112 + 1 GGCAGCU-GCCACACACGCGGGGCAAUAGAGAAUUCCGGCAGGAGUGCUGCCUCCACUGCUGUUGGCCAAUCCUCUGUCUCUCUCUCUGUCCCUGUCGCGAUCCCGCUCAAAU (((....-)))....(((.((((((((((((.((((((((((.((((.......)))).)))))))..))).)))))).........))))))))).(((....)))...... ( -37.20) >consensus GGCAGCU_GCCACACAGGCGGGGCAAUAGAGGAUUCCGGCAGGAGUGCUGCCACCGCUGCUGUUGGCUAAUCCUCU____________GUCCCUGUCGCGAUCCCGCUCAAAU (((.....)))......((((((....(((((((.(((((((.((((.......)))).)))))))...)))))))..............)))))).(((....)))...... (-24.23 = -25.50 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:21 2006