Locus 2239

Sequence ID X_DroMel_CAF1
Location 6,050,295 – 6,050,408
Length 113
Max. P 0.613524
window3627

overview

Window 7

Location 6,050,295 – 6,050,408
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.08
Mean single sequence MFE -28.60
Consensus MFE -21.04
Energy contribution -22.65
Covariance contribution 1.61
Combinations/Pair 1.10
Mean z-score -2.00
Structure conservation index 0.74
SVM decision value 0.16
SVM RNA-class probability 0.613524
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6050295 113 - 22224390
UGUGUGUUUG---GUUGUGUGUGUGGAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA
..........---......(((((....((((((((.--.....((((--..((((((((((......)))))))).((.....))..))....)))).....))))))))...))))). ( -30.50)
>DroVir_CAF1 88361 97 - 1
UAUA---A------------------AC--ACGUGCAUCUGUAUAGUUGGGGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACAAAGCUUAAACAUAA
....---.------------------.(--(((.((..(((......)))..))((((((((......)))))))).........))))....((((((.......))))))........ ( -18.20)
>DroSec_CAF1 62324 106 - 1
UGUGUGCU-------UGUGUGU---GAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA
........-------..(((((---...((((((((.--.....((((--..((((((((((......)))))))).((.....))..))....)))).....))))))))...))))). ( -31.20)
>DroEre_CAF1 58280 110 - 1
UGUGUGUUUG---GUUGUGUGU---GAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA
..(((((((.---....((..(---(((..((((...--.((((....--))))((((((((......)))))))).))))..))))..))..((((((.......))))))))))))). ( -33.10)
>DroYak_CAF1 60332 110 - 1
UGUGUGUGUG---GUUGUGUGU---GAUGACUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA
....(((((.---....((..(---(((..((((...--.((((....--))))((((((((......)))))))).))))..))))..))..((((((.......))))))..))))). ( -30.00)
>DroAna_CAF1 65450 113 - 1
UUUUCUUUCAGUGCAUUUUUGU---GAUGGCUUCGUU--CGUCUGGCU--GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA
...................(((---...((((((((.--.....((((--..((((((((((......)))))))).((.....))..))....)))).....))))))))...)))... ( -28.60)
>consensus
UGUGUGUUUG___GUUGUGUGU___GAUGGCUUCGUU__CGUCUGGCU__GGGCAACAAGUGAAAAUCCAUUUGUUAGAGGAAAUCGUGCAAAAAGCUUAAAUACGAAGCUUAAACAUAA
.................(((((......((((((((........((((....((((((((((......)))))))).((.....))..))....)))).....))))))))...))))). (-21.04 = -22.65 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:30 2006