Locus 2237

Sequence ID X_DroMel_CAF1
Location 6,044,833 – 6,044,953
Length 120
Max. P 0.569774
window3625

overview

Window 5

Location 6,044,833 – 6,044,953
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.00
Mean single sequence MFE -28.18
Consensus MFE -18.38
Energy contribution -19.70
Covariance contribution 1.32
Combinations/Pair 1.11
Mean z-score -2.10
Structure conservation index 0.65
SVM decision value 0.07
SVM RNA-class probability 0.569774
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6044833 120 - 22224390
AUCGAUGCAGAAGUUACAAAGAAACUAAAAAGUUUUUUGGAAAACUUCACCGGUUACUGGAAGGAUAACACCGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU
...(((((.((((((...((((((((....))))))))....)))))).((((...))))..((......))........(((.((((((.....)))))).)))))))).......... ( -27.10)
>DroSec_CAF1 56882 120 - 1
AUCGAUGCAGAAGUGACACUGAAAUUAAAAAGUUUUUUGGAGAACUUCAGCGGUUACUGGAAGGAUAACACGGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU
...(((((...((((((.((((........((((((....))))))))))..))))))....(((.(((.....))))))(((.((((((.....)))))).)))))))).......... ( -23.80)
>DroSim_CAF1 52765 120 - 1
AUCGAUGCAGAAGUGACACAGAAACUAAAAAGUUUUUUGGAGAACUUCAGCGGUUACUGGAAGGAUAACACGGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU
...(((((.(((((..((.(((((((....)))))))))....)))))..((((((((....)).)))).))........(((.((((((.....)))))).)))))))).......... ( -26.30)
>DroEre_CAF1 53013 111 - 1
AUCAAUGCAGCAGUGACGAAGAAACUGAAAAGUUUUUUGGAUAACUUC---------CGGAAGAAUAACACCGAGGUUCUCAACUGGAUUCCAAGAAUCCGUAUGGCAUUGAAUAGUAAU
.(((((((.(((((....((((((((....)))))))).((.((((((---------.((..........)))))))).)).)))((((((...))))))))...)))))))........ ( -30.90)
>DroYak_CAF1 54778 120 - 1
AUCGAUGGAGAAGUGACGAAGAAACUAAAAAGUUUCUUGGAGAACUUCAGUGGAAACUGGAAGGAUAACACCGAGUUUCUCAACUGGAUUUCAAAAAUACGCACGGCAUUGAAUAAUAAU
.((((((.....(((.((((((((((....))))))))...(((.(((((((((((((.(..(.....)..).)))))))..)))))).))).......)))))..))))))........ ( -32.80)
>consensus
AUCGAUGCAGAAGUGACAAAGAAACUAAAAAGUUUUUUGGAGAACUUCAGCGGUUACUGGAAGGAUAACACCGAGUUUCUCAACUGGAUUGCAAAAAUCCGUUUGGCAUUAAAUAAUAAU
...(((((.(((((..(.((((((((....)))))))).)...)))))................................(((.((((((.....)))))).)))))))).......... (-18.38 = -19.70 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:28 2006