Locus 2236

Sequence ID X_DroMel_CAF1
Location 6,043,000 – 6,043,092
Length 92
Max. P 0.519185
window3624

overview

Window 4

Location 6,043,000 – 6,043,092
Length 92
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 93.12
Mean single sequence MFE -26.40
Consensus MFE -24.50
Energy contribution -23.88
Covariance contribution -0.62
Combinations/Pair 1.14
Mean z-score -1.30
Structure conservation index 0.93
SVM decision value -0.03
SVM RNA-class probability 0.519185
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6043000 92 - 22224390
AGU-CGAGAAAGGAAUCAA-AAAUGUGGGUCAGUUCACUGACAUGGGCCCGUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC
..(-((.((.((..(((((-....(..((((((....)))))...((((((.....))))))......)..)...)))))..)).)).)))... ( -25.90)
>DroSim_CAF1 50965 90 - 1
AGU-CGAGAAAGGGGUGAA-AA--GUGGGUCAGUUCACUGACAUGGGCCCGUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC
...-..........((((.-..--....(((((....)))))...((((((.....))))))((((.(((.......))).))))))))..... ( -25.10)
>DroEre_CAF1 51344 90 - 1
AGU-CGAGAAAUGGGUGAA-AA--GUGGGUCAGUUCACUGACUUGGACCUAUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC
...-..........((((.-..--..(((((((....))))))).((((((.....))))))((((.(((.......))).))))))))..... ( -25.40)
>DroYak_CAF1 52987 92 - 1
AGUCCGAGAAAGGGGUGAAAAA--GUGGGUCAGUUCACUGACUUGGGCCCAUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC
..(((......)))((((....--..(((((((....))))))).((((((.....))))))((((.(((.......))).))))))))..... ( -29.20)
>consensus
AGU_CGAGAAAGGGGUGAA_AA__GUGGGUCAGUUCACUGACAUGGGCCCAUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC
........................(((((((((....)))))...((((((.....))))))((((.(((.......))).))))))))..... (-24.50 = -23.88 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:27 2006