Locus 2230

Sequence ID X_DroMel_CAF1
Location 6,015,821 – 6,015,914
Length 93
Max. P 0.999966
window3616

overview

Window 6

Location 6,015,821 – 6,015,914
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 96.13
Mean single sequence MFE -27.87
Consensus MFE -26.69
Energy contribution -26.72
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -2.96
Structure conservation index 0.96
SVM decision value 4.97
SVM RNA-class probability 0.999966
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6015821 93 + 22224390
-----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA
-----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00)
>DroSec_CAF1 35553 93 + 1
-----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCGGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA
-----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -27.30)
>DroSim_CAF1 32555 93 + 1
-----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA
-----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00)
>DroEre_CAF1 31461 93 + 1
-----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA
-----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00)
>DroYak_CAF1 33451 93 + 1
-----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA
-----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00)
>DroAna_CAF1 33927 98 + 1
GGAUAAAAAAAAAUGAAGUGGCAACUGCGGCCGGCAGCAGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGGAACUA
................(((.((....))..((((((((.(....)(((.(((....).......((....))))...))).....)))))))).))). ( -27.90)
>consensus
_____GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA
................((((((((((..(..(((((((.(....)...((((.......)))).((....)))).)))))..).)))))))...))). (-26.69 = -26.72 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:20 2006