Locus 223

Sequence ID X_DroMel_CAF1
Location 783,612 – 783,702
Length 90
Max. P 0.532465
window337

overview

Window 7

Location 783,612 – 783,702
Length 90
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.28
Mean single sequence MFE -30.22
Consensus MFE -16.39
Energy contribution -17.28
Covariance contribution 0.89
Combinations/Pair 1.12
Mean z-score -1.91
Structure conservation index 0.54
SVM decision value -0.00
SVM RNA-class probability 0.532465
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 783612 90 + 22224390
CUACCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUACAUCCCGAUCCU
.....((((((((((((...............)))))---------------)))).....(((((((((.....)))....)))))).........)))..... ( -27.56)
>DroSec_CAF1 99203 90 + 1
CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUGCAUCCCGAUCCU
.....((((((((((((...............)))))---------------))))..((((((((((((.....)))....))))))....)))..)))..... ( -28.96)
>DroSim_CAF1 60471 90 + 1
CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUGCAUCCCGAUCCU
.....((((((((((((...............)))))---------------))))..((((((((((((.....)))....))))))....)))..)))..... ( -28.96)
>DroEre_CAF1 111986 90 + 1
CUGCCCGGAGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCGUAAGCCAUCCCGCAUCCCGAUCCG
.....((((((((((((...............)))))---------------)))...(((.((.((.((((((......)))))).)))).)))......)))) ( -28.26)
>DroYak_CAF1 99838 90 + 1
CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUAGCAUUGCUUGCCGCGUCGUAUGCCAUCCCGCAUCCUGAUCCU
..((.((((((((((((...............)))))---------------)))).)))...(((.....))).))((((.((((......))))..))))... ( -24.36)
>DroPer_CAF1 173808 94 + 1
CUGCCCGGAGAAGCGGCCGUGCCACUGCCGCUGCUGCCGUUGCUAGCGUUGCUAGCAUUGCUAGCAUUGCUGGUCGCAUCGUAGGCCUGGCUGC-----------
..(((.((...((((((.(.....).)))))).((((.((.(((((((.(((((((...))))))).))))))).))...)))).)).)))...----------- ( -43.20)
>consensus
CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC_______________UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUGCAUCCCGAUCCU
......((((((((((.....)))))))).............................(((.((((.....))))))).......)).................. (-16.39 = -17.28 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:20 2006