Locus 2229

Sequence ID X_DroMel_CAF1
Location 6,006,579 – 6,006,678
Length 99
Max. P 0.878829
window3615

overview

Window 5

Location 6,006,579 – 6,006,678
Length 99
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 94.46
Mean single sequence MFE -31.30
Consensus MFE -26.70
Energy contribution -27.30
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.85
SVM decision value 0.91
SVM RNA-class probability 0.878829
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6006579 99 + 22224390
CCGAUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG
(((((..(((.(((..(((.(((.(((........)))))).)))..))))))....(((((...((((((((-----.......)))))))).)))))))))) ( -34.70)
>DroSec_CAF1 26713 99 + 1
CCGUUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG
(((....(((.(((..(((.(((.(((........)))))).)))..))))))....(((((...((((((((-----.......)))))))).)))))..))) ( -32.00)
>DroSim_CAF1 23365 99 + 1
CCGUUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG
(((....(((.(((..(((.(((.(((........)))))).)))..))))))....(((((...((((((((-----.......)))))))).)))))..))) ( -32.00)
>DroEre_CAF1 21317 99 + 1
CCAAUUCGGCGCAGUGCAUCGCCCAUGUCCUUGCCCAAGUCCAAGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG
((.....((((.((..(((.....)))..)))))).............(((((.....((...))((((((((-----.......))))))))..)))))..)) ( -23.90)
>DroYak_CAF1 23808 104 + 1
CCAUUUUGGCACAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUACUGGCCCUCCGGCUUAGCGUGCAAUUCAAUUCAAUUAAAGUUGCAUAAGGCCAUCGG
((.....(((.((((((((.(((.(((........)))))).)))))))))))....(((((...((((((((............)))))))).)))))...)) ( -33.90)
>consensus
CCGUUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU_____CAAUUAAAGUUGCAUAAGGCCAUCGG
((.....(((.(((.((((.(((.(((........)))))).)))).))))))....(((((...((((((((............)))))))).)))))...)) (-26.70 = -27.30 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:19 2006