| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,002,955 – 6,003,052 |
| Length | 97 |
| Max. P | 0.906361 |
| Location | 6,002,955 – 6,003,052 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 71.08 |
| Mean single sequence MFE | -14.31 |
| Consensus MFE | -8.15 |
| Energy contribution | -7.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6002955 97 - 22224390 AAUGAAGGCAUUUAGCAAUGCGAUGCCGAAAAAAAAUGUACAAAUGGGUAAAAAAAAAGAACGGAAUGUGCAGAAAUACGAGCGGCGAUGGAUAAUU .......(((((....)))))..(((((........((((((..((...............))...))))))..........))))).......... ( -16.33) >DroPse_CAF1 20198 85 - 1 AAUGAAGGCAUUUAGCAAUACGAUGCCGAAGAGAAA----AAAAUUGAAAAAC----UAAA--AGGAAAACUGACACGCAAAUUGC--UUGCAAAUU ......((((((((....)).)))))).........----.............----....--..............((((.....--))))..... ( -11.50) >DroSec_CAF1 23054 93 - 1 AAUGAAGGCAUUUAGCAAUGCGAUGCCGAAAAAAAAUUUACAAAUGGUAAAAA----AAAACAGAAAAAGCUGAAAUGCGAGCGGCGAUGGAUAAUU .......(((((....)))))..(((((........(((((.....)))))..----............((......))...))))).......... ( -15.10) >consensus AAUGAAGGCAUUUAGCAAUGCGAUGCCGAAAAAAAAU_UACAAAUGGAAAAAA____AAAAC_GAAAAAGCUGAAAUGCGAGCGGCGAUGGAUAAUU ......((((((((....)).))))))...................................................................... ( -8.15 = -7.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:13 2006