Locus 2225

Sequence ID X_DroMel_CAF1
Location 6,002,552 – 6,002,662
Length 110
Max. P 0.631125
window3608

overview

Window 8

Location 6,002,552 – 6,002,662
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.63
Mean single sequence MFE -32.14
Consensus MFE -20.66
Energy contribution -19.74
Covariance contribution -0.92
Combinations/Pair 1.31
Mean z-score -2.26
Structure conservation index 0.64
SVM decision value 0.20
SVM RNA-class probability 0.631125
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6002552 110 + 22224390
AUGUAUAUGUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCCCAACAACUUUGGAG----------CAUUAAUGGGCCAAGCGUUUUUGCGGCUUAUG
.....((((.(((((((((((.(((....)))))))...(((((.(...((((....(((((.((((.....)))).)----------))))...))))...).)))))))))))))))) ( -31.50)
>DroSec_CAF1 22672 107 + 1
AUGUAUAUGUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCC---CAACUUUGGAG----------CAUUAAUGGGCCAAUCGUUUUUGCGGCUUAUG
.....((((.(((((((((((.(((....)))))))...(((((.....((((....(((((.(---((....))).)----------))))...)))).....)))))))))))))))) ( -29.80)
>DroSim_CAF1 19282 107 + 1
AUGUAUAUAUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCA---CAACUUUGGAG----------CAUUAAUGGGCCAAGCGUUUUUGCGGCUUAUG
.....((((.(((((((((((.(((....)))))))...(((((.(...((((....(((((..---((....))..)----------))))...))))...).)))))))))))))))) ( -28.30)
>DroEre_CAF1 17346 112 + 1
-----UAUGUGGCUGUGUGGGAUGCAAAUGCACCCACUUAAAAGACAGUGCUUUUAAAGUGCCC---CAACUUUGGGGCAUAAAUGGGCAUUAAUGGGCCAAGCGUUUUUGCAGCUUAUC
-----.....(((((((((((.(((....))))))))...(((((((((((((.....((((((---((....))))))))....))))))).....((...)))))))))))))).... ( -43.80)
>DroYak_CAF1 19732 107 + 1
AUGUAUAUGUAGCGGUAUGGGAUGCAAAUGUAUCCACUUAAAAUACAUAGCUUUUAAAGUGCCC---AAACUUUGGAG----------CAUUAAUGGGCCAAACGCUUUUGCAGCUUAUG
.((((.....((((((((.((((((....)))))).......))))...((((....(((((((---(.....))).)----------))))...))))....))))..))))....... ( -27.30)
>consensus
AUGUAUAUGUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCC___CAACUUUGGAG__________CAUUAAUGGGCCAAGCGUUUUUGCGGCUUAUG
.....((((.(((((((((((.(((....)))))))................((((((((.........))))))))................................))))))))))) (-20.66 = -19.74 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:13 2006