Locus 2224

Sequence ID X_DroMel_CAF1
Location 5,998,020 – 5,998,114
Length 94
Max. P 0.850863
window3607

overview

Window 7

Location 5,998,020 – 5,998,114
Length 94
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 77.01
Mean single sequence MFE -20.67
Consensus MFE -6.99
Energy contribution -8.15
Covariance contribution 1.16
Combinations/Pair 1.20
Mean z-score -2.08
Structure conservation index 0.34
SVM decision value 0.79
SVM RNA-class probability 0.850863
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5998020 94 + 22224390
G-AAAUGAAAAGGCGGCGA--GAA-----------AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG
(-((((..((..((.(((.--...-----------..))).))..))..))))).....((.(((((........(((.....)))........))))).))...... ( -19.59)
>DroPse_CAF1 15004 87 + 1
GAAAAUGAAGAGGCGGUGCCCAAA-----------AAUGUGGCCGUUGUA-CUUACAAAUUGAGCCAAAUGAAUAAGUAAGUGAACGGGGG--GC-------AGUUUU
.........(((((..(((((...-----------.......(((((.((-(((((..(((.(......).)))..)))))))))))).))--))-------)))))) ( -21.10)
>DroSec_CAF1 18182 94 + 1
G-AAAUGAAAAGGCGGCGA--GAA-----------AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG
(-((((..((..((.(((.--...-----------..))).))..))..))))).....((.(((((........(((.....)))........))))).))...... ( -19.59)
>DroSim_CAF1 14354 94 + 1
G-AAAUGAAAAGGCGGCGA--GAA-----------AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG
(-((((..((..((.(((.--...-----------..))).))..))..))))).....((.(((((........(((.....)))........))))).))...... ( -19.59)
>DroEre_CAF1 12862 100 + 1
--AAAUGGAAAGGCGGCGG--GAAAUGCGGCGGGAAAUGCGGCAGCG-AAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAGGGCGACUGGAAAU---
--.............(((.--.(..(((.(((.....))).)))...-..)..)))...((.(((((..(.....(((.....))).....)..))))).))...--- ( -23.50)
>consensus
G_AAAUGAAAAGGCGGCGA__GAA___________AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG
.....................................(((((..........)))))..((.(((((........(((.....)))........))))).))...... ( -6.99 =  -8.15 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:12 2006