Locus 2216

Sequence ID X_DroMel_CAF1
Location 5,982,063 – 5,982,181
Length 118
Max. P 0.500000
window3594

overview

Window 4

Location 5,982,063 – 5,982,181
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 92.97
Mean single sequence MFE -26.52
Consensus MFE -22.78
Energy contribution -23.46
Covariance contribution 0.68
Combinations/Pair 1.07
Mean z-score -1.19
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5982063 118 + 22224390
ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCCGUUGCCGACAAGAGAGCACUGUGACUGUCAGCCACUCAAAAAGGAUUCGAAUUUC
((((.((((........(((((.(((((....))))))))))...........(((((((((.......)))))))))....)))).))))........................... ( -23.20)
>DroSec_CAF1 6276 111 + 1
ACAAACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACGAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC-------
......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).............------- ( -27.90)
>DroSim_CAF1 19035 111 + 1
ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACAAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC-------
......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).............------- ( -28.20)
>DroEre_CAF1 6231 111 + 1
ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGCUGCCGACGAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC-------
......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).............------- ( -27.90)
>DroYak_CAF1 16134 110 + 1
ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACUGGAGAGCACUGUGGCUCUCAC-CCCUCAAAAAGGAUCG-------
.(((.(((((..((((.(((((.(((((....)))))))))).(((........)))))))...))).)).)))((((((......))))))..-.(((.....)))....------- ( -25.40)
>consensus
ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACAAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC_______
......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).................... (-22.78 = -23.46 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:00 2006