Locus 2215

Sequence ID X_DroMel_CAF1
Location 5,981,635 – 5,981,747
Length 112
Max. P 0.678373
window3593

overview

Window 3

Location 5,981,635 – 5,981,747
Length 112
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 90.02
Mean single sequence MFE -27.98
Consensus MFE -23.32
Energy contribution -23.20
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.43
Structure conservation index 0.83
SVM decision value 0.30
SVM RNA-class probability 0.678373
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5981635 112 - 22224390
UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUGGCAAGUCUGGGAAAUUGAAUUC--AAUAGUA--
..((((((....(((((((((((.......))))))..)))))....))))))...(...(((((..(((..((((((......))))))..)))..)))))..)--.......-- ( -26.70)
>DroSec_CAF1 5850 112 - 1
UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUAGCAAGUCUGGGAAAUUGAUUUC--AAUAGUA--
..((((((....(((((((((((.......))))))..)))))....)))))).((...........(((..((((((......))))))..))).((((....)--))).)).-- ( -26.70)
>DroSim_CAF1 18607 112 - 1
UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUAGCAAGACUGGGAAAUUGAAUUC--AAUAGUA--
..((((((....(((((((((((.......))))))..)))))....)))))).............(((.((((((..((((..((....))..))))..)).))--)).))).-- ( -26.70)
>DroEre_CAF1 5799 112 - 1
UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGACCGAAUAUUAAGA----UGAUUUGGUUUGAUGAGUCUGGGAAAUUUAAUUCCUACUAUUGAA
..((((((....(((((((((((.......))))))..)))))....))))))(((((((.......----..)))))))(..((.(((..(((((......))))))))))..). ( -30.20)
>DroYak_CAF1 15698 108 - 1
UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGCAUUUCAACA----UGAUUUGUUUUGGCAAGUCUGCGAAAUUGAAUUC--AAUAGUA--
..((((((....(((((((((((.......))))))..)))))....))))))..((((........----.(((((((....)))))))))))..((((....)--)))....-- ( -29.60)
>consensus
UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUGGCAAGUCUGGGAAAUUGAAUUC__AAUAGUA__
..((((((....(((((((((((.......))))))..)))))....))))))...................((((((......)))))).......................... (-23.32 = -23.20 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:59 2006