| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,971,093 – 5,971,196 |
| Length | 103 |
| Max. P | 0.549161 |
| Location | 5,971,093 – 5,971,196 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 94.82 |
| Mean single sequence MFE | -20.39 |
| Consensus MFE | -19.17 |
| Energy contribution | -19.17 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5971093 103 + 22224390 UUCGGUGCUGACCGAAGUUGCGCUGCGCUCAUUCAUAAAUUAUGCUGGCAAUUUAAACAUAUUUUACAUAUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))((((.((((.....))))))))........))).))))))))........ ( -20.56) >DroSim_CAF1 5177 103 + 1 UUCGGUGCUGACCGAAGUUGCGCUGCGCUCAUUCAUAAAUUAUGCUGGCAAUUUAAACAUAUUUUACAUAUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))((((.((((.....))))))))........))).))))))))........ ( -20.56) >DroYak_CAF1 5169 97 + 1 UUCGGUGCUGACCGAAGUUGCGCUGCGCUCUUUUAUAAAUUAUGCUGGCAAUUUAAACAUAUU------AUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))((((......------..))))........))).))))))))........ ( -20.06) >consensus UUCGGUGCUGACCGAAGUUGCGCUGCGCUCAUUCAUAAAUUAUGCUGGCAAUUUAAACAUAUUUUACAUAUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))..............................))).))))))))........ (-19.17 = -19.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:56 2006