Locus 2211

Sequence ID X_DroMel_CAF1
Location 5,969,657 – 5,969,777
Length 120
Max. P 0.922375
window3586

overview

Window 6

Location 5,969,657 – 5,969,777
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -44.73
Consensus MFE -43.87
Energy contribution -43.87
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.98
SVM decision value 1.15
SVM RNA-class probability 0.922375
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5969657 120 + 22224390
AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCCGUCGGCAAUGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC
........((....((((((((......(((((((((((.((((((((..(((((......)))))...))))..)))).))))).)))).)).(((....))).)))))))).....)) ( -43.50)
>DroSim_CAF1 3792 120 + 1
AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCCGUCGGCAAGGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC
........((....((((((((......(((((((((((.((((((((....)))..((((........)))).))))).))))).)))).)).(((....))).)))))))).....)) ( -44.80)
>DroYak_CAF1 3794 120 + 1
AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCGGUCGGCAAGGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC
........((....((((((((......(((((((((((.((((((((....)))..((((........)))).))))).))))).)))).)).(((....))).)))))))).....)) ( -45.90)
>consensus
AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCCGUCGGCAAGGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC
........((....((((((((......(((((((((((.((((((((..(((((......)))))...))))..)))).))))).)))).)).(((....))).)))))))).....)) (-43.87 = -43.87 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:53 2006