| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,967,343 – 5,967,458 |
| Length | 115 |
| Max. P | 0.968192 |
| Location | 5,967,343 – 5,967,458 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.46 |
| Mean single sequence MFE | -11.28 |
| Consensus MFE | -10.85 |
| Energy contribution | -10.63 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.28 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5967343 115 - 22224390 CUUGCUAUAUA---UUUCCCCAAAUCUCUUAACCCCCAUUUACGUCAUUUUAUCCAACCCCCAAAGUGCCGUUAGUUGUCGUAUAC--UUUGACUCCUCGUUCGUUCACUUUGCUUUACA ...........---...............................................(((((((.((..((..((((.....--..))))..))....))..)))))))....... ( -11.40) >DroSim_CAF1 1427 115 - 1 NNNNNNNNNNN---NNNNNNNNNNNNNNNUAACCCCCAUUUAUGUCAUUUUAUCCAACCCCCAAAGUGCCGUUAGUUGUCGUACAC--UUUGACUCCUCGUUCGUUCACUUUGCUUUACA ...........---...............................................(((((((.((..((..((((.....--..))))..))....))..)))))))....... ( -11.40) >DroYak_CAF1 1413 120 - 1 CUUGCUACAUAUAUAUUUCCCGAGCCUCUUAACCCCCAUUUACAUCAUUUUAUCCAACCCCCAAAGUGCCGUUAGAUGUCGUACACAAUUUGGCUCCUCGUUCGUUCACUUUGCUUCACA .....................(((((.......(..(((((((..((((((...........))))))..).))))))..)..........)))))........................ ( -11.03) >consensus CUUGCUA_AUA____UU_CCC_A__CUCUUAACCCCCAUUUACGUCAUUUUAUCCAACCCCCAAAGUGCCGUUAGUUGUCGUACAC__UUUGACUCCUCGUUCGUUCACUUUGCUUUACA .............................................................(((((((.((..((..((((.........))))..))....))..)))))))....... (-10.85 = -10.63 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:50 2006