Locus 2206

Sequence ID X_DroMel_CAF1
Location 5,964,512 – 5,964,603
Length 91
Max. P 0.644810
window3580

overview

Window 0

Location 5,964,512 – 5,964,603
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 90.48
Mean single sequence MFE -22.93
Consensus MFE -17.99
Energy contribution -18.10
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.29
Structure conservation index 0.78
SVM decision value 0.23
SVM RNA-class probability 0.644810
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5964512 91 - 22224390
AAGCAUUUCGGUUCGAGUUUCUUGAGCUUCCAGCAUGCAAAAUAAUGUACAUAAUUGUAUAUACAUAUAACCGAGUGGAACUCUGUUUGCA
..((.....((((((((...))))))))....)).((((((...(((((((....)))))))..........(((.....)))..)))))) ( -20.90)
>DroSec_CAF1 11050 91 - 1
AAGCAUUUCGGUUCGAGUUUCUUGAGCUUCCAGCAUGCAAUAUAAUGUACAUAUUUGUAUAUACAUAUAAACGAGUGGAACUGUGUUUGCA
..(((...((((((.(....((((.((.....))..........(((((((....))))))).........))))).))))))....))). ( -19.60)
>DroYak_CAF1 11976 87 - 1
AAGCAUUUCAGUUCGAGUUGGUUGAGCUUCCAGCAUGCAAUAAAAUGUACAUAUAUGUAUAU----AUAACCGAGUGGAACUGUGUUUGCA
..(((...((((((.(.(((((((.((.....))..........(((((((....)))))))----.))))))).).))))))....))). ( -28.30)
>consensus
AAGCAUUUCGGUUCGAGUUUCUUGAGCUUCCAGCAUGCAAUAUAAUGUACAUAUUUGUAUAUACAUAUAACCGAGUGGAACUGUGUUUGCA
..(((...((((((.(.((..(((.((.....))..........(((((((....))))))).....)))..)).).))))))....))). (-17.99 = -18.10 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006