Locus 2205

Sequence ID X_DroMel_CAF1
Location 5,963,504 – 5,963,616
Length 112
Max. P 0.716767
window3579

overview

Window 9

Location 5,963,504 – 5,963,616
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 98.81
Mean single sequence MFE -24.07
Consensus MFE -22.59
Energy contribution -22.37
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.85
Structure conservation index 0.94
SVM decision value 0.39
SVM RNA-class probability 0.716767
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5963504 112 + 22224390
UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAGAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUUAAUGGCUA
.....((((.((((((....(((.((((((.......)))))).)))))))))...((.(((((..(((((..(((....)))..)))))....))))).))....)))).. ( -23.60)
>DroEre_CAF1 15102 112 + 1
UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAAAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUAAAUGGCUA
.....((((..((((..((.(((.((((((.......)))))).))).((((((((((((((........))).)))))))))))............)).))))..)))).. ( -25.00)
>DroYak_CAF1 10930 112 + 1
UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAGAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUUAAUGGCUA
.....((((.((((((....(((.((((((.......)))))).)))))))))...((.(((((..(((((..(((....)))..)))))....))))).))....)))).. ( -23.60)
>consensus
UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAGAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUUAAUGGCUA
.....((((.((((((....(((.((((((.......)))))).)))))))))...((.(((((..((((((.((((....)))).)).)))).))))).))....)))).. (-22.59 = -22.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006