Locus 2202

Sequence ID X_DroMel_CAF1
Location 5,956,905 – 5,957,025
Length 120
Max. P 0.619468
window3574

overview

Window 4

Location 5,956,905 – 5,957,025
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.61
Mean single sequence MFE -29.92
Consensus MFE -26.72
Energy contribution -26.58
Covariance contribution -0.14
Combinations/Pair 1.12
Mean z-score -1.23
Structure conservation index 0.89
SVM decision value 0.18
SVM RNA-class probability 0.619468
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5956905 120 - 22224390
CCUACUUUACGUCCGGCUGGAAUAUCAUGGACGGAUCUUUGGUUACCAUUUCCAUAAUUGAUUUGUUAAUGUCCCUGAUUAGCGAAUCGAGUCCGAGGAUAUUUGGGAUUUUAAGGGUAA
..((((((........((.(((((((.((((((((....(((...)))..)))....(((((((((((((.......))))))))))))))))))..))))))).))......)))))). ( -34.44)
>DroVir_CAF1 15470 120 - 1
CAUAUUUCACAUCCGGCUGGAAUAUAAUGGAUGGAUCUUUGGUUACAAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA
.........((((((............)))))).((((((((...............(((((((((((((.......))))))))))))).((((((....))))))...)))))))).. ( -28.70)
>DroPse_CAF1 4690 120 - 1
CGUACUUCACAUCCGGUUGGAACAUCAUGGACGGAUCUUUGGUUACCAUUUCCAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA
..........((((((.(((...((((.(((....))).))))..)))...))....(((((((((((((.......))))))))))))).((((((....)))))).......)))).. ( -29.70)
>DroGri_CAF1 14900 120 - 1
CAUAUUUCACAUCCGGCUGGAAUAUAAUGGAUGGAUCUUUGGUUACAAUUUCGAUAGUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCCAGGAUAUUUGGGAUUUUAAGGGUAA
..........((((..((.((((((..(((((.((...(((....)))..)).))..(((((((((((((.......)))))))))))))...)))..)))))).)).......)))).. ( -28.00)
>DroWil_CAF1 4009 120 - 1
CAUAUUUUACAUCCGGUUGGAAUAUCAUGGACGGAUCUUUGGUUACCAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGUCCAAGGAUAUUUGGGAUUUUAAGGGUAA
..........((((..((.(((((((.((((((((....(((...))).))).....(((((((((((((.......))))))))))))))))))..))))))).)).......)))).. ( -30.00)
>DroMoj_CAF1 16698 120 - 1
CAUAUUUCACAUCCGGCUGGAAUAUAAUGGAUGGAUCUUUGGUUACAAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAGUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA
.........((((((............)))))).((((((((...............(((((((((((((.......))))))))))))).((((((....))))))...)))))))).. ( -28.70)
>consensus
CAUAUUUCACAUCCGGCUGGAAUAUAAUGGACGGAUCUUUGGUUACAAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA
.........((((((............)))))).((((((((...............(((((((((((((.......))))))))))))).((((((....))))))...)))))))).. (-26.72 = -26.58 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:42 2006