Locus 2201

Sequence ID X_DroMel_CAF1
Location 5,955,238 – 5,955,335
Length 97
Max. P 0.962715
window3573

overview

Window 3

Location 5,955,238 – 5,955,335
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 77.96
Mean single sequence MFE -34.08
Consensus MFE -26.53
Energy contribution -26.95
Covariance contribution 0.42
Combinations/Pair 1.38
Mean z-score -2.07
Structure conservation index 0.78
SVM decision value 1.54
SVM RNA-class probability 0.962715
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5955238 97 - 22224390
GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGACGC--CGCCGAUAAACAAGUAUAGCCGAUGCACCAACC-ACAACCACUCUUCU
((((((((((((....)))))))......((.(((((((....)))))))--.))..................))))).......-.............. ( -37.10)
>DroPse_CAF1 2902 81 - 1
GCGUGU--UUCGCGAAG--AGCGAUAUAAGCAGUGC-----AAGCAGUGCAUAUUCGUUAUAUAAAUA---CCUAUUGAACAUCCCCCUACUA-------
(((...--..)))....--(((((.(((.(((.((.-----...)).))).)))))))).........---......................------- ( -15.10)
>DroSec_CAF1 1440 97 - 1
GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGGCGC--CGCCGAUAAACAAGUGUAGCCGAUGCACCAACC-ACAACCACUCUUCU
((((((((((((....)))))))..((..((.(((((((....)))))))--.))......((....)).)).))))).......-.............. ( -37.10)
>DroSim_CAF1 1854 97 - 1
GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGGCGC--CGCCGAUAAACAAGUGUAGCCGAUGCACCAACC-ACAACCACUGUUCU
((((((((((((....)))))))..((..((.(((((((....)))))))--.))......((....)).)).))))).......-.............. ( -37.10)
>DroEre_CAF1 6705 97 - 1
GCGUCCGCUGGCGGCAGCCGGCGAAGCAAGCAGUGCCUCGCAAGAGGCGC--CGCCGAUAAAGCAGUGUAGCCGAUGCACCAACC-ACAACCACUCUUCU
((((((((((((....)))))))......((.(((((((....)))))))--.)).......((......)).))))).......-.............. ( -39.60)
>DroYak_CAF1 2688 97 - 1
GCGUCCGUUGGCUGAAGCCGGCGCAGCAAGCAGUGCCUCGGAAGAGGCGC--CGCCGAUAAAGCAGUGUAGCCGAUGCACCAACC-ACAACCACUCUUCU
(((((.((((((((....((((((.....)).(((((((....)))))))--.))))......)))).)))).))))).......-.............. ( -38.50)
>consensus
GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGCCUCGCAAGAGGCGC__CGCCGAUAAACAAGUGUAGCCGAUGCACCAACC_ACAACCACUCUUCU
((((((((((((....)))))))......((.(((((((....)))))))...))..................)))))...................... (-26.53 = -26.95 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:39 2006