Locus 220

Sequence ID X_DroMel_CAF1
Location 775,504 – 775,595
Length 91
Max. P 0.827708
window333

overview

Window 3

Location 775,504 – 775,595
Length 91
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 83.45
Mean single sequence MFE -34.54
Consensus MFE -21.46
Energy contribution -21.42
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -2.33
Structure conservation index 0.62
SVM decision value 0.70
SVM RNA-class probability 0.827708
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 775504 91 + 22224390
AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUGUGUGCCGAAAACGUG-------GGGCC-GAGGGGAAACAGAUGCCCAGA-AGACUGGGAAAUGCC
...((..((((.....(((((((((........)))).))))).......-------((((.-....(....)....))))...-.....))))...)). ( -27.40)
>DroSec_CAF1 89671 91 + 1
AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAACGUG-------GGGCC-AAGGGGAAAGAGAUGCCCAGA-AGACUGGGAAAUGCC
...((......)).....(((..((((....(((((..((((........-------)))).-..)))))....))))(((((.-...)))))....))) ( -28.90)
>DroSim_CAF1 50873 91 + 1
AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAACGUG-------GGGCC-AAGGGGAAAGAGAUGGCCAGA-AGACUGGGAAAUGCC
...((..((((.....(((((((..((....(((((..((((........-------)))).-..)))))..))..))))).))-.....))))...)). ( -29.10)
>DroEre_CAF1 104083 98 + 1
CUAGUCAUACUGCAAAUCGACCACGUCGAAAUCUGUGUGCCCCAAUCGUGCCGAGG-GGGCA-GAGGGGAAACAGAUACCCAGCAGGACUGGGAAAUGCC
((((((...((((...(((((...))))).((((((...((((..((.((((....-.))))-))))))..)))))).....))))))))))........ ( -38.80)
>DroYak_CAF1 91664 100 + 1
GCAGUCCUGCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAUCGUGCUCAGCGGAGCACGAGGGGAAACAGAUACCCGGCGGGACUGGGAAAUGCC
.(((((((((((....(((((...)))))....(((((.(((...((((((((....)))))))).)))..)))))....)))))))))))......... ( -48.50)
>consensus
AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAACGUG_______GGGCC_GAGGGGAAACAGAUGCCCAGA_AGACUGGGAAAUGCC
...........(((..(((((...))))).((((((...(((.....((..........)).....)))..)))))).(((((.....)))))...))). (-21.46 = -21.42 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:17 2006