Locus 22

Sequence ID X_DroMel_CAF1
Location 58,706 – 58,799
Length 93
Max. P 0.847456
window26

overview

Window 6

Location 58,706 – 58,799
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 96.77
Mean single sequence MFE -19.68
Consensus MFE -17.72
Energy contribution -18.28
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.44
Structure conservation index 0.90
SVM decision value 0.77
SVM RNA-class probability 0.847456
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 58706 93 + 22224390
UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUACCACAACAGUAAAAGCUGAAGUUGAAUUCGAGUCUUACUCCGAUGCU
((((((....))))))...((((....((((..((.((((.((((.(.((..((((....))))..)).).))).).)))).)))))).)))) ( -20.40)
>DroSec_CAF1 36464 93 + 1
UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCAAGUCCUACUCCGAUGCU
((((((....))))))...((((....((((..((..(((..(((..(((..((((....))))..)))..)))...)))..)))))).)))) ( -19.30)
>DroSim_CAF1 36292 93 + 1
UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCAAGUCCUACUCCGAUGCU
((((((....))))))...((((....((((..((..(((..(((..(((..((((....))))..)))..)))...)))..)))))).)))) ( -19.30)
>DroEre_CAF1 18447 93 + 1
UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCGAGUCUUACUCUGAUGCU
((((((....))))))................(((((((.....((((((..((((....))))...(((....))))))))).))))))).. ( -20.40)
>DroYak_CAF1 29466 93 + 1
UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGCUGAAUUCGAGUCUUACUCUGAUGCU
((((((....))))))................(((((((.....((((((..((((....))))....((....)).)))))).))))))).. ( -19.00)
>consensus
UUGCAACAGUUUGCAGAACAGCAACAACGGAACGUCAGACACAAUAAGACAACAGUAAAAGCUGAAGUUGAAUUCGAGUCUUACUCCGAUGCU
((((((....))))))...((((....((((..((.((((..(((..(((..((((....))))..)))..)))...)))).)))))).)))) (-17.72 = -18.28 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:33 2006