Locus 2197

Sequence ID X_DroMel_CAF1
Location 5,950,133 – 5,950,226
Length 93
Max. P 0.510958
window3567

overview

Window 7

Location 5,950,133 – 5,950,226
Length 93
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 87.33
Mean single sequence MFE -32.73
Consensus MFE -25.45
Energy contribution -24.80
Covariance contribution -0.65
Combinations/Pair 1.19
Mean z-score -1.83
Structure conservation index 0.78
SVM decision value -0.04
SVM RNA-class probability 0.510958
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5950133 93 + 22224390
CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCACUGC----UU---GUCUGUGUAGGUGUGUGUGGUGUGGAGAGUAGGGCAUAUUCAUUGUGUGUGU
.......(((((..(((.((((...((((..(((.((((----..---......))))))).)))))))))))..))))).((((((.....)))))).. ( -30.80)
>DroSim_CAF1 43746 100 + 1
CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCACUGCUUGCUUGGUGUCUGUGUAGGUGUGUGUGGUGUGGUGAGUAGGGCAUAUUCAUUGUGUGUGU
.......(((((..(((.((((..(((((((((((.((((.....))))..)))).)))))))...)))))))..))))).((((((.....)))))).. ( -35.20)
>DroYak_CAF1 40308 100 + 1
CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCAUUGCUUGCUUGGUGUCUGUGUUGGUGUGAGUGUGAUUGUGAGCAGGGUGUAUUCAUUGUGUGCGU
....((((((((..(.(((((..(((((((.((((.((((.....))))..))))..)))))))..))))).)..)))))((((....))))...))).. ( -32.20)
>consensus
CGAGGCACUGCUUGCCAUCACCGUUACAUUUCGCACUGCUUGCUUGGUGUCUGUGUAGGUGUGUGUGGUGUGGUGAGUAGGGCAUAUUCAUUGUGUGUGU
.......(((((..(((((((...(((((((.((((.((.........))..))))))))))).)))..))))..))))).((((((.....)))))).. (-25.45 = -24.80 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:33 2006