Locus 2193

Sequence ID X_DroMel_CAF1
Location 5,938,987 – 5,939,080
Length 93
Max. P 0.691949
window3562

overview

Window 2

Location 5,938,987 – 5,939,080
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -34.62
Consensus MFE -24.59
Energy contribution -25.48
Covariance contribution 0.90
Combinations/Pair 1.32
Mean z-score -1.64
Structure conservation index 0.71
SVM decision value 0.33
SVM RNA-class probability 0.691949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5938987 93 + 22224390
AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCAACGGCGACCGCGACAGCGACUGCUUAAAAGC
.......((((.....((((((..(((((((((((....)((((....))))))))))))))..))))))..))))(((....)))....... ( -34.20)
>DroPse_CAF1 28807 79 + 1
--ACCCAGUGUAG--UGUCGUUGUUGUUGCUGACGAC-----CGAC-GCGCUGCCGUUGACGCUGGCGCUGGCGCCAG----UGCUUAAAAGC
--.....(.((((--((.((((((((((...))))).-----))))-)))))))).((((((((((((....))))))----)).)))).... ( -32.30)
>DroSec_CAF1 26366 93 + 1
AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCGACGGCAACGGCGACAGCGACUGCUUAAAAGC
......(((((....((((((...(((((((((((....)((((....)))))))))))))).((....)))))))).)))))(((....))) ( -35.80)
>DroSim_CAF1 32636 93 + 1
AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCGACGGCGACCGCGACAGCGACUGCUUAAAAGC
.......((((...((((((((...((((((((((....)((((....)))))))))))))))))))))...))))(((....)))....... ( -33.60)
>DroEre_CAF1 26247 93 + 1
AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUGCGUCGACUGCGACGCCGGCAGCGACGGCGACCGCGACAGCGACUGCUUAAAAGC
.......((((...((((((((...((((((((((..((((.....)))).))))))))))))))))))...))))(((....)))....... ( -34.30)
>DroYak_CAF1 29142 87 + 1
AUACUUGGUUGAAUUUGUUGUUAGUGCUGCCGGCGACAGCGUCGACAGCGACGUCGGCAGCGACGCC------GGCAGCGACUGCUUAAAAGC
.....................((((((((((((((...((((((((......)))))).))..))))------)))))).))))......... ( -37.50)
>consensus
AUACUUGGUUGAAUUUGUUGUUAGUGCUGCUGGCGACUACGUCGACUGCGACGCCGGCAGCGACGGCGACCGCGACAGCGACUGCUUAAAAGC
.......((((.....((((((..(((((((((((....)((((....))))))))))))))..)))))).....))))....(((....))) (-24.59 = -25.48 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:28 2006