Locus 2191

Sequence ID X_DroMel_CAF1
Location 5,935,440 – 5,935,546
Length 106
Max. P 0.542174
window3560

overview

Window 0

Location 5,935,440 – 5,935,546
Length 106
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 81.47
Mean single sequence MFE -26.93
Consensus MFE -15.34
Energy contribution -16.96
Covariance contribution 1.62
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.57
SVM decision value 0.02
SVM RNA-class probability 0.542174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5935440 106 + 22224390
AAAAUAGAGCUGGAACAAAAAUCGAUGAUUUUUUCGAUUGC------------ACGCUGGCAAGCGGUUUACAAC-AUUGAUAUCGAUAAUAAACUAACAGCGAAAUGGCCUAGCUGUA
....((.((((((..((..((((((........))))))..------------.((((((....)((((((....-((((....))))..))))))..)))))...))..)))))).)) ( -27.40)
>DroSec_CAF1 23105 105 + 1
AAAAUAGAGCUGGAACAAAAAUCGAUGACUU-UUCGAUUGC------------ACGCUGGCAAGCGGUUUACAAC-AUUGAUAUCGAUAACAAGCUAACUGCGAAAUGGCCUAGCUGUA
....((.((((((..((...(((((((.(..-.......((------------.((((....)))))).......-...).))))))).....((.....))....))..)))))).)) ( -25.31)
>DroEre_CAF1 22711 113 + 1
AAAAUAGAGCUGGAACAAAAAUCGAUGAUUU-UUCGAUUGCCGCGUUGCGGCCACACUAGCAAGCGGUUUACAACUAAUUAUAUCGAUA-----AUAAUCGAUAAAUGGACUUACUGUA
........(((((......((((((......-.))))))(((((...)))))....)))))..(((((......(((....(((((((.-----...)))))))..)))....))))). ( -29.50)
>DroYak_CAF1 25546 117 + 1
AAAAUAGAGCUGGAACAAAAAUCGAUGAUUU-UUCGAUUGCCCCGAUGCGGUCACACUAGCAAGCGGUUUACAAC-AUUGAUAUCGAUAAUUCAAUAAUCGAAAAAUGGCCUUGCUGUA
........(((((...(((((((...)))))-)).((((((......))))))...)))))..(((((......(-(((....(((((.........)))))..)))).....))))). ( -25.50)
>consensus
AAAAUAGAGCUGGAACAAAAAUCGAUGAUUU_UUCGAUUGC____________ACACUAGCAAGCGGUUUACAAC_AUUGAUAUCGAUAAUAAAAUAACCGAGAAAUGGCCUAGCUGUA
....((.((((((..((..((((((........))))))........................((((((.......((((....))))........))))))....))..)))))).)) (-15.34 = -16.96 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:26 2006