Locus 2190

Sequence ID X_DroMel_CAF1
Location 5,934,756 – 5,934,853
Length 97
Max. P 0.897486
window3559

overview

Window 9

Location 5,934,756 – 5,934,853
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 84.95
Mean single sequence MFE -34.90
Consensus MFE -26.68
Energy contribution -27.16
Covariance contribution 0.48
Combinations/Pair 1.21
Mean z-score -2.10
Structure conservation index 0.76
SVM decision value 1.00
SVM RNA-class probability 0.897486
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5934756 97 + 22224390
UAUCGGAUCGUCCCACGGGGCGAAUACAUAUUUCUCGUAUCUCUUGCGGAUUAGGACGCUCAGGACGGCCUCCUUGCUGGAGGCCACCUCUUGAUCC
....(((((((((....(((((......((..((.((((.....)))))).))...))))).))))(((((((.....))))))).......))))) ( -38.30)
>DroSec_CAF1 22440 97 + 1
UAUGGGAUCGUCCCACGGUGCGAAUACAUAUUGCUCGUAUCUCGUGCGGAUUAGAUAGCGCAGGACGGCUUCCUUGCUGGAGGCCACAUCCUGAUCC
....(((((((((...(((((((...........)))))))..((((..........)))).))))(((((((.....))))))).......))))) ( -37.70)
>DroSim_CAF1 28565 97 + 1
UAUGGGAUCGUCCCACGGUGCGAAUACAUAUUGCUCGUAUCUCGUGCGGAUUAGAUAGCGCAGGACGGCUUCCUUGCUGGAGGCCACAUCCUGAUCC
....(((((((((...(((((((...........)))))))..((((..........)))).))))(((((((.....))))))).......))))) ( -37.70)
>DroEre_CAF1 22039 97 + 1
UAUGGGAUCGUCCCAACGAGCGAAUGUAUAGUUUUCGUAUCUCGUACGGAUGAGGAUGCGCAGGUCGGUCUCCUUACCGGAAGACAACUCCUGAUCC
.......((((((..(((((((((.........))))...)))))..))))))((((...((((...((((((.....)).))))....)))))))) ( -29.30)
>DroYak_CAF1 24869 97 + 1
UAUGGGAUCGUCCCAACGGGCGAAUAUAUAUUUUUCGUAUCUCGUGCGAAUAAAGAAGCGCAGGACGGUCUCCUUACUGGAGGACACCUCCUGAUCC
...((((((((((......(((((.........))))).....((((..........)))).))))))))))......(((((...)))))...... ( -31.50)
>consensus
UAUGGGAUCGUCCCACGGGGCGAAUACAUAUUUCUCGUAUCUCGUGCGGAUUAGGAAGCGCAGGACGGCCUCCUUGCUGGAGGCCACCUCCUGAUCC
....(((((((((....(((((((.......)))(((((.....)))))........)))).))))(((((((.....))))))).......))))) (-26.68 = -27.16 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:25 2006