Locus 219

Sequence ID X_DroMel_CAF1
Location 775,141 – 775,231
Length 90
Max. P 0.531974
window332

overview

Window 2

Location 775,141 – 775,231
Length 90
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.27
Mean single sequence MFE -24.28
Consensus MFE -16.19
Energy contribution -16.16
Covariance contribution -0.03
Combinations/Pair 1.08
Mean z-score -1.57
Structure conservation index 0.67
SVM decision value -0.00
SVM RNA-class probability 0.531974
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 775141 90 - 22224390
C------------CCUUUCUCUCUGUGUACGCAGAAGGAAAAACAUGAAAACAUGC-------CACUCACCAUCCAGCUUG------CUGCUGC-----AACUUUCCCGUUUGGCUUUUU
.------------..((((..(((((....)))))..)))).............((-------((.........((((...------..)))).-----(((......)))))))..... ( -19.40)
>DroSec_CAF1 89257 96 - 1
C------------CAUUUCUCUCUGUGCACGCAGAAAGAAAAACAUGAAAACAUGC-------CACUCACCACCCGGCUUGCACUCGCUGCUGC-----AACUUUCCCGUUUGGCUUUUU
.------------..(((((.(((((....))))).)))))..((((....)))).-------......(((..(((.((((((.....).)))-----)).....)))..)))...... ( -21.60)
>DroSim_CAF1 50459 96 - 1
C------------CAUUUCUCUCUGUGCACGCAGAAAGAAAAACAUGAAAACAUGC-------CACUCACCACCCGGCUUGCACUCGCUGCUGC-----AACUUUCCCGUUUGGCUUUUU
.------------..(((((.(((((....))))).)))))..((((....)))).-------......(((..(((.((((((.....).)))-----)).....)))..)))...... ( -21.60)
>DroEre_CAF1 103695 113 - 1
CAAUGUGAGGCGAGGUUUCUCUCUGUGUACGCAGAAGG-AAAACAUGAAAACAUGAA-AACACCACCCACCACCCAGCCUGCAGUCGCUGCUGC-----AACUUUCCCGUUUGGCUUUUU
....(((.((.(..(((((..(((((....)))))..)-)...((((....))))..-)))..).))))).....((((.(((((....)))))-----(((......))).)))).... ( -29.00)
>DroYak_CAF1 91280 120 - 1
CAAUGUGAGGCGACGUUUCUCUCUGUGUACGCAGAAAGAAAAACACGAAAACAUGCCACUCACCACCCACCACCCAGCUUGCAGUCGCUGCUGCAACGCAACUUUCCCGUUUGGCUUUUU
..((((....((...(((((.(((((....))))).)))))....))...))))((((..................(((((((((....))))))).))(((......)))))))..... ( -29.80)
>consensus
C____________CAUUUCUCUCUGUGUACGCAGAAAGAAAAACAUGAAAACAUGC_______CACUCACCACCCAGCUUGCACUCGCUGCUGC_____AACUUUCCCGUUUGGCUUUUU
...............(((((.(((((....))))).)))))..((((....))))..............(((..((((..((....)).))))......(((......))))))...... (-16.19 = -16.16 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:16 2006