Locus 2184

Sequence ID X_DroMel_CAF1
Location 5,909,968 – 5,910,062
Length 94
Max. P 0.824272
window3544

overview

Window 4

Location 5,909,968 – 5,910,062
Length 94
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 79.69
Mean single sequence MFE -25.57
Consensus MFE -19.40
Energy contribution -20.78
Covariance contribution 1.38
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.76
SVM decision value 0.69
SVM RNA-class probability 0.824272
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5909968 94 + 22224390
UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGUACGCACCCAAACGACGAGGAAACGGGGAGGAAUGGCAACAUAAUCUUGUUU--------------------------
.((((((((.....((((((.....((((......))))((((....))))..............))))))...(((....)))..))))))))-------------------------- ( -25.80)
>DroSec_CAF1 4778 95 + 1
UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGGACCCACCCAAACCACAAGGAAAUGGGGAGGAAUGGCAACAUAAUCUUGUUUC-------------------------
.((((((((....((((((......((((......))))))))))((.((((..((....))...))))..)).(((....)))..)))))))).------------------------- ( -27.00)
>DroSim_CAF1 5193 95 + 1
UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGGACGCACCCAAACCACAAGGAAAUGGGGAGGAAUGGCAACAUAAUCUUGUUUC-------------------------
.((((((((.....(((((.....(((((......)))))(((.....)))...(((........)))))))).(((....)))..)))))))).------------------------- ( -26.90)
>DroEre_CAF1 4834 120 + 1
UGAACGAGAAUAAGUCUCCGAAGAUACUUUUAAUUAAGUGGCGGCGCACCCAAUCAACGACGAAAUGGCGAGGAAUGGCAACAAGAUCUUGCGAAUUUUACAAAUAGUUUAACAGGGUAU
.............(.(.(((....(((((......))))).))).))((((................((((((..((....))...))))))(((((........)))))....)))).. ( -22.60)
>consensus
UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGGACGCACCCAAACCACAAGGAAAUGGGGAGGAAUGGCAACAUAAUCUUGUUUC_________________________
.((((((((.....((((((....(((((......)))))(((.....)))..............))))))...(((....)))..)))))))).......................... (-19.40 = -20.78 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:12 2006