| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,904,421 – 5,904,521 |
| Length | 100 |
| Max. P | 0.954768 |
| Location | 5,904,421 – 5,904,521 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.11 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -15.76 |
| Energy contribution | -16.68 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5904421 100 + 22224390 -GCUUACCAACUCACAAGCUCCA-------------CCA---ACUGGCAGUGGUGCGUGAAAGCAGCAGGCACCACCACCA---GCACCAAUUCUACACUGGGGGAAAAAAAAAACUUGA -((((..........))))(((.-------------...---.((((..(((((((.((.......)).)))))))..)))---)..(((.........))).))).............. ( -27.10) >DroSec_CAF1 20979 99 + 1 -GCUUACCAACUCACAAGCUCCA-------------CCA---ACUGGCAGUGGUGCGUGAAAGCAGCAGGCACCACCACCAGCAGCACCACUUCUGCACCGGGAGAA----AAAACUGGG -.....(((.........((((.-------------...---..(((..(((((((.((.......)).)))))))..)))((((........))))....))))..----.....))). ( -31.49) >DroSim_CAF1 18349 99 + 1 -GCUUACCAACUCACAAGCUCCA-------------CCA---ACUGGCAGUGGUGCGUGAAAGCAGCAGGCACCACCACCAGCAGCACCAAUUCUGCACCAGGAGAG----AAAACUGGG -.....(((.........((((.-------------...---..(((..(((((((.((.......)).)))))))..)))((((........))))....))))..----.....))). ( -31.69) >DroEre_CAF1 20882 105 + 1 -GCUUACCAACUCACCAGCUCCCCAGCUCCCCAGCUCCACCAGCUGGCAGUGGUGCGUGAAAGCA---GGCACCACC------AGCACCAAUUCUACACCGGGCGAA----A-AGCCGGG -(((..........((((((....((((....)))).....))))))..(((((((.((....))---.))))))).------)))............((.(((...----.-.))).)) ( -37.80) >DroYak_CAF1 21343 93 + 1 GGCUUACCAACUCGCAAGCUCCA-------------CCAACUGGUGGCAGUGGUGCGUGAAAGCA---GGCACCGCC------AGCACCAAUUCUACACCGCGCGAA----A-AACUUGG ......((((.((((..((((((-------------((....))))).)))(((((((....)).---(((...)))------.))))).............)))).----.-...)))) ( -32.40) >consensus _GCUUACCAACUCACAAGCUCCA_____________CCA___ACUGGCAGUGGUGCGUGAAAGCAGCAGGCACCACCACCA__AGCACCAAUUCUACACCGGGAGAA____AAAACUGGG .................((.................(((.....)))..(((((((.((.......)).)))))))........))............((((.............)))). (-15.76 = -16.68 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:10 2006