Locus 2181

Sequence ID X_DroMel_CAF1
Location 5,903,796 – 5,903,909
Length 113
Max. P 0.979442
window3541

overview

Window 1

Location 5,903,796 – 5,903,909
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.69
Mean single sequence MFE -26.86
Consensus MFE -22.72
Energy contribution -22.96
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -2.09
Structure conservation index 0.85
SVM decision value 1.84
SVM RNA-class probability 0.979442
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5903796 113 - 22224390
AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA-------AGAC
..(((((((((.....)))..........((((((((((........((..(..(((((((......)))))))..))).......))))))))))........)))))-------)... ( -25.06)
>DroSec_CAF1 20372 113 - 1
AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA-------AGAC
..(((((((((.....)))..........((((((((((........((..(..(((((((......)))))))..))).......))))))))))........)))))-------)... ( -25.06)
>DroSim_CAF1 17740 113 - 1
AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA-------AGAC
..(((((((((.....)))..........((((((((((........((..(..(((((((......)))))))..))).......))))))))))........)))))-------)... ( -25.06)
>DroEre_CAF1 20317 112 - 1
AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGCAGCUCGUUGGCUAUGGGAAAGAUUAUGGCGGCGGAAAAGUGUGUCGAGUGGA-UGAUAAUUGCA-------CUAU
...((((((((.....))).........((((((((....((((((((((((((.((((((......)))))))))))....))).)))))).))))-))))..)))))-------.... ( -31.50)
>DroYak_CAF1 20746 115 - 1
AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGACGCUGGUU-GCUAUGGGUA----UAUGGCGAAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCAUAUAGCAUAAU
...((((((((.....)))..........(((((((((......(((((..((-((((((....----))))))))......))))))))))))))........)))))........... ( -27.60)
>consensus
AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA_______AGAC
...((((((((.....)))..........((((((((((........((..((((((((((......)))))))))))).......))))))))))........)))))........... (-22.72 = -22.96 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:09 2006