| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,883,731 – 5,883,837 |
| Length | 106 |
| Max. P | 0.740279 |
| Location | 5,883,731 – 5,883,837 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.03 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -25.53 |
| Energy contribution | -25.42 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5883731 106 - 22224390 UAUUAACUACUAAAGAAGUGGUAGAAGCACACUUACAUUUCCUGUGUGGAUAACGUGAGGAGUCCAACGGCCAGGGCGUGCUCCUUGCCCUCAGCCAUGAUGGCCA ......((((((......))))))..(((((...........)))))((((..(....)..))))...((((((((((.......)))))(((....)))))))). ( -34.80) >DroSec_CAF1 453 106 - 1 UAUUAACUACUAAAGAAGUGGUAGAAGCAGACUUACAUUUCCUGUGUGGAUAGCGUGAGAAGUCCAACGGCCAGGGCGUGCUCCUUGCCCUCAGCCAUGAUGGCCA ......((((((......))))))..((((...........)))).(((((..(....)..)))))..((((((((((.......)))))(((....)))))))). ( -34.20) >DroSim_CAF1 453 106 - 1 UAUUAACUACUAAAGAAGUGGUAGAAGCAGACUUACAUUUCCUGUGUGGAUAGCGUGAGAAGUCCAACGGCCAGGGCGUGCUCCUUGCCCUCAGCCAUGAUGGCCA ......((((((......))))))..((((...........)))).(((((..(....)..)))))..((((((((((.......)))))(((....)))))))). ( -34.20) >DroEre_CAF1 455 95 - 1 --UUAACCGCUAAGGAAG-------GG--CACUUACAUUUCCUGUGUGGAUAGCGUGAGGAGUCCGAUGGCCAGGGCGUGCUCCUUGCCCUCAGCCAUGAUGGCCA --......((((.....(-------((--(.(((((...(((.....)))....)))))..)))).(((((.((((((.......))))))..)))))..)))).. ( -34.20) >DroYak_CAF1 442 95 - 1 --UUAACUUCUAAGUAAA-------GG--CACUUACAUUUCCUGCGUGGAUAGCGUGAGCAGUCCGAUGGCCAGGGCGUGCUCCUUGCCCUCAGCCAUGAUGGCCA --................-------((--(................(((((.((....)).)))))(((((.((((((.......))))))..)))))....))). ( -32.80) >DroAna_CAF1 442 91 - 1 -------UCCUAA--------UGGAAAGCCACUCACAUUUCCUCAGUGGACAGAGUGAGCAGACCAAUGGCCAGGGCAUGCUCCUUGCCCUCCGCCAUGAUGGCCA -------(((...--------.)))..(((((((((.(((((.....))).)).))))).......(((((.((((((.......))))))..)))))..)))).. ( -32.80) >consensus __UUAACUACUAAAGAAG___UAGAAGCACACUUACAUUUCCUGUGUGGAUAGCGUGAGAAGUCCAACGGCCAGGGCGUGCUCCUUGCCCUCAGCCAUGAUGGCCA ...............................(((((...(((.....)))....))))).........((((((((((.......)))))(((....)))))))). (-25.53 = -25.42 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:51 2006