Locus 2171

Sequence ID X_DroMel_CAF1
Location 5,883,028 – 5,883,130
Length 102
Max. P 0.918763
window3519 window3520

overview

Window 9

Location 5,883,028 – 5,883,130
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 92.81
Mean single sequence MFE -27.27
Consensus MFE -22.27
Energy contribution -22.83
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -3.59
Structure conservation index 0.82
SVM decision value 1.12
SVM RNA-class probability 0.918763
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5883028 102 + 22224390
AUGGAAAACCAUCGAUGAUUCCUCGAAACACAUCGAUGCUUGUGAUUUUUCGAAAACAUCGAUGACAUCGAGUUGGCAUCGAUGUUUCUCCACCUCUAACCG
.((((.((.((((((((.(..(((((....((((((((.((.(((....))).)).))))))))...)))))..).)))))))).)).)))).......... ( -35.60)
>DroSec_CAF1 88408 102 + 1
AUAGAAAAACAUCGAUGAUUCCAUGAAAAACAUCGAUGCUUUUGAUUUUUCGAAAACAUUGAUGACAUCGAGUAUGCAUCUAUGUUUCUCCACCUCUAACCG
...((.((((((.((((((((.(((.....((((((((.((((((....)))))).)))))))).))).))))...)))).)))))).))............ ( -25.00)
>DroSim_CAF1 90527 102 + 1
AUAGAAAAACAUCGAUGAUUCCAUGAAAAACAUCGAUGCUUUAGAUUUUUCGAAAACAUUGAUGACAUCGAGUAUGCAUCUAUGUUUCUCCACCUCUAACCG
...((.((((((.((((((((.(((.....((((((((.(((.((....)).))).)))))))).))).))))...)))).)))))).))............ ( -21.20)
>consensus
AUAGAAAAACAUCGAUGAUUCCAUGAAAAACAUCGAUGCUUUUGAUUUUUCGAAAACAUUGAUGACAUCGAGUAUGCAUCUAUGUUUCUCCACCUCUAACCG
...((.((((((.((((....(.(((....((((((((.((((((....)))))).))))))))...))).)....)))).)))))).))............ (-22.27 = -22.83 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 5,883,028 – 5,883,130
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 92.81
Mean single sequence MFE -33.53
Consensus MFE -26.17
Energy contribution -26.73
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -3.99
Structure conservation index 0.78
SVM decision value 0.87
SVM RNA-class probability 0.870099
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5883028 102 - 22224390
CGGUUAGAGGUGGAGAAACAUCGAUGCCAACUCGAUGUCAUCGAUGUUUUCGAAAAAUCACAAGCAUCGAUGUGUUUCGAGGAAUCAUCGAUGGUUUUCCAU
.........((((((((.((((((((....(((((...(((((((((((..((....))..)))))))))))....)))))....)))))))).)))))))) ( -42.80)
>DroSec_CAF1 88408 102 - 1
CGGUUAGAGGUGGAGAAACAUAGAUGCAUACUCGAUGUCAUCAAUGUUUUCGAAAAAUCAAAAGCAUCGAUGUUUUUCAUGGAAUCAUCGAUGUUUUUCUAU
.........((((((((((((.((((.((..((.(((.((((.(((((((.((....)).))))))).)))).....))).)))))))).)))))))))))) ( -28.90)
>DroSim_CAF1 90527 102 - 1
CGGUUAGAGGUGGAGAAACAUAGAUGCAUACUCGAUGUCAUCAAUGUUUUCGAAAAAUCUAAAGCAUCGAUGUUUUUCAUGGAAUCAUCGAUGUUUUUCUAU
.........((((((((((((.((((.((..((.(((.((((.(((((((.((....)).))))))).)))).....))).)))))))).)))))))))))) ( -28.90)
>consensus
CGGUUAGAGGUGGAGAAACAUAGAUGCAUACUCGAUGUCAUCAAUGUUUUCGAAAAAUCAAAAGCAUCGAUGUUUUUCAUGGAAUCAUCGAUGUUUUUCUAU
.........((((((((((((.((((.....((.(((.((((.(((((((.((....)).))))))).)))).....))).))..)))).)))))))))))) (-26.17 = -26.73 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:50 2006